Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H20
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13646-2|AAP68930.1| 295|Caenorhabditis elegans Hypothetical pr... 132 2e-31
AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical ... 32 0.36
AC024831-10|AAK72074.2| 521|Caenorhabditis elegans Hypothetical... 29 2.6
Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 28 5.9
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 28 5.9
AF440509-1|AAL34097.1| 194|Caenorhabditis elegans SKR-7 protein. 28 7.8
AC024790-7|AAF60641.1| 194|Caenorhabditis elegans Skp1 related ... 28 7.8
>U13646-2|AAP68930.1| 295|Caenorhabditis elegans Hypothetical
protein ZK783.2 protein.
Length = 295
Score = 132 bits (320), Expect = 2e-31
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = +2
Query: 233 EDGTIRLPNKNLD-KLESDVLYHLGLDTKNYDLPALFGDVKFVCIGGTKHRMREFAEFVS 409
++G + PNK D K + D LYH G D+PA+FGD KFVC GG+ R + +AE+ +
Sbjct: 6 KNGNVEKPNKYFDIKDKRDFLYHFGFGVDTLDIPAVFGDTKFVCTGGSPGRFKLYAEWFA 65
Query: 410 FNVFHGKNMKLVNLTKHSHRYATYKVGPVLSVSHGIGIPSMTTALQEIIKLLHYAKAVDP 589
N+ S R+ YK GPV ++HG+G PS++ L E KL+H+A +P
Sbjct: 66 KEA----NIPCSENLSRSDRFVIYKTGPVCWINHGMGTPSLSIMLVESFKLMHHAGVKNP 121
Query: 590 IVFRIGTSGGLGIPPGSVVVSSWGLNGYLEKSYDIPVMGRSLKLP 724
R+GTSGG+G+PPG+VVVS+ +N L +Y + G+ ++ P
Sbjct: 122 TFIRLGTSGGVGVPPGTVVVSTEAMNAELGDTYVQIIAGKRIERP 166
>AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical
protein K12B6.2 protein.
Length = 597
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 706 THNRNIVTLLQISVEAPARYNDGTWWYTEPPRRANSEHYRVDSL 575
THN V L S+E + WW E RR E++R+++L
Sbjct: 553 THNFFSVWLTVRSIEKKQEHGFVLWWIEEESRRCEKENFRLEAL 596
>AC024831-10|AAK72074.2| 521|Caenorhabditis elegans Hypothetical
protein Y55F3C.3a protein.
Length = 521
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 586 PYSVQNWHVGGARYTTRFRRCIELGPQRIFGEELR 690
P S+ ++GG+ Y R R I+ GP+ + G +R
Sbjct: 64 PDSILRLNIGGSSYRIRTRSIIKFGPKTLLGRFVR 98
>Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical
protein T23G5.1 protein.
Length = 788
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 206 HPGKEYPKNEDGTIRLPNKNLDKLESDVLY 295
H GK P D T + KN DKL S ++Y
Sbjct: 114 HTGKHAPMISDETWAIIEKNADKLNSAIVY 143
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +2
Query: 347 VKFVCIGGTKHRMREFAEFVSFNVFHGKNMKLVNLTKHSHRYATYKVGPVLSVSHGIGIP 526
++FV + H + +E + FH N V LT++ T K V + SHG+
Sbjct: 380 LRFVRLSRQDHLLERISECIGVEAFHENN---VQLTEYVENATTLK--GVEAKSHGLKAQ 434
Query: 527 SMTTALQEIIKLLHY 571
A E++ L Y
Sbjct: 435 YALGAYNELVLLHRY 449
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +2
Query: 347 VKFVCIGGTKHRMREFAEFVSFNVFHGKNMKLVNLTKHSHRYATYKVGPVLSVSHGIGIP 526
++FV + H + +E + FH N V LT++ T K V + SHG+
Sbjct: 380 LRFVRLSRQDHLLERISECIGVEAFHENN---VQLTEYVENATTLK--GVEAKSHGLKAQ 434
Query: 527 SMTTALQEIIKLLHY 571
A E++ L Y
Sbjct: 435 YALGAYNELVLLHRY 449
>AF440509-1|AAL34097.1| 194|Caenorhabditis elegans SKR-7 protein.
Length = 194
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +2
Query: 194 WXPSHPGKEYPKNEDGT---IRLP--NKNLDKLESDVLYHLGLDTKNYDLPAL 337
W H G+ P +D I +P + N K+++DVL+ L + + D+P L
Sbjct: 80 WCEKHKGETLPVEDDSVPKNITVPEWDTNFLKIDNDVLFDLIVASNFLDVPGL 132
>AC024790-7|AAF60641.1| 194|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 7 protein.
Length = 194
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +2
Query: 194 WXPSHPGKEYPKNEDGT---IRLP--NKNLDKLESDVLYHLGLDTKNYDLPAL 337
W H G+ P +D I +P + N K+++DVL+ L + + D+P L
Sbjct: 80 WCEKHKGETLPVEDDSVPKNITVPEWDTNFLKIDNDVLFDLIVASNFLDVPGL 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,699
Number of Sequences: 27780
Number of extensions: 413598
Number of successful extensions: 1153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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