Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H19
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 2.7
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 27 2.7
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 2.7
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 2.7
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 26 6.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.3
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 8.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 8.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 8.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.3
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 40 SSRHPSQSLXXNXSALNSYSRS 105
S+ PS+SL N SALNS RS
Sbjct: 55 SAEPPSESLDDNISALNSLQRS 76
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 405 MMKMVVIVEYLSKIDEAVVPGDGIGNFSSFRYMD 304
M +M I + SK+ EAV+PG + F Y D
Sbjct: 437 MDRMRAIADDKSKVGEAVLPGFVVSEAGDFEYHD 470
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 279 RALHANMGRPYTGRKRSCRCRRQGPRLRQSWKDIRRSLPFSSSFTNEEIPHGSP 440
RAL++ + P T R + Q RLRQ + D +S + +PH P
Sbjct: 206 RALYSTVDAPETLEPLKHRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPP 259
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 364 NLGKIFDDHYHFHHRSLTKRSLTAAHEH 447
+L + F D+ HF H+S R+ + A EH
Sbjct: 348 DLYRTFPDNVHFRHKSKHSRNSSDASEH 375
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 311 YRKEEKLPMPSPGTTASSILERYSTITTIF 400
Y + ++P +PGT + L R T+ T+F
Sbjct: 126 YDDKSRIPSVTPGTVETDALRRDFTVNTLF 155
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 292 PTWAVHIPEGREVADAVARDHGFVNL 369
PTW + P+G E +A D G NL
Sbjct: 71 PTWIIGTPDGNEHGSYLALDLGGTNL 96
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 289 CNALVLFQCATEPTPGSRVREHRAPSHGHTHQLVLINIAHTQN 161
C F C T G+R++ P T LVLIN+ HT N
Sbjct: 402 CGNQPKFGCKTVINEGNRIQLVSVPEFRKTGVLVLINM-HTLN 443
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 262 ATEPTPGSRVREHRAPSHGHTH 197
++ P P + RE+ PSH TH
Sbjct: 31 SSSPLPSNSCREYSLPSHPSTH 52
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 475 VRWAEQQKILSRKKRDFQIISTLY 546
+ WA Q+ I++ K+ DF +T Y
Sbjct: 117 ITWAMQETIVNEKRNDFLFDATAY 140
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 260 DRTDTRIESTRTPRAIARSHSPASTY 183
D T S RTPR RS+SP S Y
Sbjct: 101 DDVVTNSSSHRTPRHHRRSYSPRSDY 126
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 547 SIMWI*FENPSFFLTGFFVVQPIEPCYHLL 458
S+ WI PS FLT ++ + YHL+
Sbjct: 1021 SVTWIKEAPPSNFLTWEIIISDLTRTYHLI 1050
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 8.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 664 KFILNDPKWPHMW 702
K +L++ KWPH+W
Sbjct: 158 KNLLSEEKWPHVW 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,401
Number of Sequences: 5004
Number of extensions: 58510
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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