Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H19
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0407 - 3219980-3221278                                           31   0.93 
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    30   2.1  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    28   6.5  
06_01_0287 - 2099008-2099023,2099441-2099472,2099776-2099814,209...    28   8.6  
03_03_0094 + 14378953-14380728                                         28   8.6  

>12_01_0407 - 3219980-3221278
          Length = 432

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 FVNLGKIFDDHYHFHHRSLTKRSLTAAHEH 447
           F  LGK+ D H+H HHR   K  ++   EH
Sbjct: 56  FGELGKV-DHHHHHHHRQHAKNGMSDDEEH 84


>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 319 LPVYGRPMLACNALVLFQCATEPTPGSRVREHRAPSHGHTHQLVLINIA--HTQNSLGRL 146
           L V G P+ A   +V F    +      +RE R+P+ G T     I +A  +T+  L  L
Sbjct: 349 LAVKGDPVSAFGGIVAFNTTIDEDLAKEIREFRSPTDGQTRMFYEIVVAPGYTEKGLEIL 408

Query: 145 R 143
           +
Sbjct: 409 K 409


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 269 KQH*GITRQHGPSIYRKEEKLPMPSPGTTASSILERYSTITTIFIIVH*RRDPSRQPTSI 448
           K++ G T ++   I    +KLP+ +  + A +  E+ S    + +      +PS++P+  
Sbjct: 630 KKNNGATTENSSQISESAKKLPLTANKSQADTSTEKLSESDILAVASSQITEPSKKPSEN 689

Query: 449 TAD 457
           TA+
Sbjct: 690 TAE 692


>06_01_0287 -
           2099008-2099023,2099441-2099472,2099776-2099814,
           2099916-2099967,2100100-2100164,2100238-2100321,
           2101144-2101191,2101272-2101392,2101809-2101911,
           2102456-2102537,2102670-2102717,2102993-2103129,
           2103225-2103313,2104206-2104327
          Length = 345

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 334 DAVARDHGFVNLGKIFDDHYHFHHRSLTKRS 426
           DA A     VN G + DD+ HF  R  TKR+
Sbjct: 35  DAAASKLSCVNKGYMKDDYVHFFVRRTTKRA 65


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 280 GHYTPTWAVHIPEGREVADAVARDHGFVNLGK 375
           GHYTP  A H P  R +A+ +   +G +NL K
Sbjct: 85  GHYTPLPAGHSPLKRPIAEYLR--YGVINLDK 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,691
Number of Sequences: 37544
Number of extensions: 404540
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)