Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H17
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    89   2e-19
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    88   4e-19
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   2.6  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.0  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 89.4 bits (212), Expect = 2e-19
 Identities = 40/74 (54%), Positives = 46/74 (62%)
 Frame = +3

Query: 3   RRNHPHXLCIICGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIV 182
           R N  H +C  CG  S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V
Sbjct: 11  RHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKV 70

Query: 183 RRRFRNGFKEGKPT 224
            R F+NGF+ GKPT
Sbjct: 71  HRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 41/81 (50%), Positives = 47/81 (58%)
 Frame = +3

Query: 3   RRNHPHXLCIICGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIV 182
           R N  H +C  CG  S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V
Sbjct: 11  RHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKV 70

Query: 183 RRRFRNGFKEGKPTPPKKAVA 245
            R F+NGF+ GKP     A A
Sbjct: 71  HRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 181 TIFK*RMRPVPVVFLRLAFTDQW*XRNFAAGYPHWAHF 68
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
 Frame = +3

Query: 15  PHXLCIICGISSYHIQ-----KSKCAQCG 86
           PH LC  CG    HI        KC  CG
Sbjct: 103 PHVLCTTCGAIDDHISVRCPWTKKCMNCG 131


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 281 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 186
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,426
Number of Sequences: 5004
Number of extensions: 18868
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)