Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H17
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    95   2e-20
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    94   3e-20
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    93   6e-20
03_06_0680 - 35497868-35497884,35498058-35501961                       29   1.4  
03_06_0678 - 35480711-35484658                                         28   2.5  
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   5.8  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = +3

Query: 3   RRNHPHXLCIICGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIV 182
           RRN  H LC+ CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V
Sbjct: 11  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHV 70

Query: 183 RRRFRNGFKEGKPTPPKKAVASS 251
            RRF++ F+EG    P+K  A++
Sbjct: 71  PRRFKSNFREGTEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 39/81 (48%), Positives = 53/81 (65%)
 Frame = +3

Query: 3   RRNHPHXLCIICGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIV 182
           RRN  H LC+ CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V
Sbjct: 32  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHV 91

Query: 183 RRRFRNGFKEGKPTPPKKAVA 245
            RRF++ F+EG    P+K  A
Sbjct: 92  PRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 93.5 bits (222), Expect = 6e-20
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = +3

Query: 3   RRNHPHXLCIICGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIV 182
           RRN  H LC+ CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+L+ V
Sbjct: 11  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHV 70

Query: 183 RRRFRNGFKEGKPTPPKKAVASS 251
            +RF++ F+EG    P+K  A++
Sbjct: 71  PKRFKSNFREGTEAAPRKKGAAA 93


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 17  PXVMHHLWYLVISHSKIKMRPMWIS 91
           P  +HHL YL +S SKIK  P  IS
Sbjct: 601 PKYLHHLRYLDLSESKIKALPEDIS 625


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 17  PXVMHHLWYLVISHSKIKMRPMWIS 91
           P  +HHL YL +S+SKI+  P  IS
Sbjct: 592 PKYLHHLRYLDLSYSKIEALPEDIS 616


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 86  ISCSKITXLPLVSEG*AQEDYWNW--PHASFEDC 181
           I+   +T +  +S   + +D W W  PH  +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,740,409
Number of Sequences: 37544
Number of extensions: 128445
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)