Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H15
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    30   1.7  
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896     29   3.0  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   7.0  
08_01_0917 + 9033451-9036136,9036373-9036722                           27   9.2  
04_04_0543 - 26112461-26112667                                         27   9.2  

>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 20  PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRD 166
           P+ +   PT+P+RGAP  S    ++ +W Q    LS +  +TA   V D
Sbjct: 89  PKKAAAAPTTPSRGAPSASA-APVSSSWEQLKSLLSCR-SATAAARVHD 135


>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
          Length = 260

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 23  RPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQV 136
           RPS P PT+PA G  C +   +     S   QKL   V
Sbjct: 147 RPSSPAPTNPADGPRCDAATSSHRLLPSALQQKLEEHV 184


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 68   CRSTNEALAETWSQKNQKLS 127
            CR+  E L ETWSQK+  +S
Sbjct: 3165 CRAQLEQLQETWSQKDMTIS 3184


>08_01_0917 + 9033451-9036136,9036373-9036722
          Length = 1011

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 153 YQYAMTSLY*CYIRFTYTLNNSFGYLTFINSQRVS 257
           ++  +TSL   Y  FT TL +  G+LT INS  VS
Sbjct: 394 WKLKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVS 428


>04_04_0543 - 26112461-26112667
          Length = 68

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 493 CVCVCVCLFHNYSNSHIFDY 434
           C C C+C+   Y + H F++
Sbjct: 39  CDCTCLCMMTEYQDRHSFEF 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,449
Number of Sequences: 37544
Number of extensions: 215398
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)