Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H14
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    27   0.13 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 413 ESQSNGVDNSNGTQKSQLVFHCQQAH 490
           +S S+ VDNSN ++K   + H   AH
Sbjct: 249 KSPSHSVDNSNSSEKKSSIQHGDDAH 274


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 718 SIFCFNYXYFLWSTFSMR 665
           S++CFNY   + +TF  R
Sbjct: 74  SLYCFNYYVIVVTTFYKR 91


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 535 FFDVRETRDEAQWTS 491
           F++ +  R EAQWTS
Sbjct: 674 FYENKFYRQEAQWTS 688


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 366 LNTRRHRYHPHQSKILNHSLMELIIATVRRSH 461
           ++  R+R+ P   K   HSL  L++ T   +H
Sbjct: 207 ISCARYRFMPDIKKKGLHSLPRLVLFTSEDAH 238


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 91  GNHTCVASSNSMCT 132
           GN+TC+AS+++  T
Sbjct: 674 GNYTCLASNSASVT 687


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 1   DRGRVSGSLHCASQCQSFH 57
           DRGRV+ +    ++  SFH
Sbjct: 174 DRGRVAAAAAMVAETASFH 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,757
Number of Sequences: 336
Number of extensions: 3776
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)