Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H14
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 191 KITYRPMAIFDDYIVMFSET---VHIEFDDATQVWLPWRTN 78
           K T R  ++F    +   ET   ++ EFD AT+   PW T+
Sbjct: 91  KFTTRDCSLFPGNALSCKETFSLLYYEFDVATKEPPPWETD 131


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 78  IRPPGQPHLRSVVEFNVY 131
           IRPP +  L  +V+FN++
Sbjct: 1   IRPPSKQGLPVLVDFNIF 18


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 566 FSPEDILFCTLNTHKVDMKKLL 631
           F P  +    LN H  DM+KL+
Sbjct: 634 FKPPTLTESLLNRHNEDMEKLM 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,753
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)