Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H13
         (362 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    20   6.8  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    20   9.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   9.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   9.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 184 VHFVITVCVCYLIVIYNLIINKKYLY 261
           VH +  +C+ Y +V    ++   Y Y
Sbjct: 125 VHLLFLLCIYYFVVPLFFLLCIYYFY 150


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 212 QTHTVITKCTI 180
           +THT+  KCTI
Sbjct: 2   RTHTLPCKCTI 12


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 39  YYNIYDKYNN*QKLHITNLDKKNPPSN*FLENIKNYNS 152
           +YN    Y + +    TN     PP++   E+  NYNS
Sbjct: 442 HYNGDPNYISPEVFPNTNNAIMTPPASVQTESSDNYNS 479


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 39  YYNIYDKYNN*QKLHITNLDKKNPPSN*FLENIKNYNS 152
           +YN    Y + +    TN     PP++   E+  NYNS
Sbjct: 390 HYNGDPNYISPEVFPNTNNAIMTPPASVQTESSDNYNS 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,640
Number of Sequences: 336
Number of extensions: 1178
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)