Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H12
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    27   2.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   6.2  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   8.2  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 407
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 1   PPTIISASHSLSVMLIFPHALYSIFINFSIHNLTVGNLYVFK 126
           PP +    H +  ++I   AL S+F N  IH+       VFK
Sbjct: 486 PPLVTGLFHVMHQLVIATTALRSMFTNAEIHDFDGDEEEVFK 527


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 647 YFMVHNIIYSYIIVGNLSIRICLKRIGDFSYLIVFFEQHLQKFPIAALASFK-PLYSL 477
           Y ++H ++     V  L   + +    DF YL +F E+H   F      +F  P +SL
Sbjct: 708 YVVIHTLLKVIFSVVPLPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAFDYPYFSL 765


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 578 KRIG--DFSYLIVFFEQHLQKFPIAALASFKPLYSLPFY*SRY--DHQLRATVRSERALF 411
           KRIG  DF++L V  + +  K  +A L S K LY++      +  ++    + +SE+ +F
Sbjct: 676 KRIGLEDFTFLSVLGKGNFGKVMLAELKSEKQLYAIKVLKKEFILENDEVESTKSEKRVF 735

Query: 410 VL 405
           ++
Sbjct: 736 LV 737


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 43  LIFPHALYSIFINFSIHNLTVGNLYVFK 126
           ++F H L+S     S++ L V +LY+F+
Sbjct: 66  ILFQHPLFSKLFRISLYILGVFSLYMFR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,999
Number of Sequences: 5004
Number of extensions: 61012
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)