Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H12
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0146 - 12274721-12274989,12275090-12275240                       60   2e-09
12_02_0346 - 17776871-17781445                                         31   0.91 
11_02_0068 + 7991816-7992603,7995209-7997177                           29   2.8  
08_02_0648 - 19694538-19696569,19697151-19697998                       28   6.4  
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987...    28   6.4  
07_03_1367 + 26072270-26072374,26074047-26074724                       28   8.5  
01_03_0201 + 13758227-13758760,13758784-13759452                       28   8.5  

>06_02_0146 - 12274721-12274989,12275090-12275240
          Length = 139

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = +3

Query: 234 DSRGPPVFFYFSGSKLPDGN-SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDRE 398
           D+ G      F   +    N +WCPDC  AEPV+   +       +K ++ +   VGD+ 
Sbjct: 26  DAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKP 85

Query: 399 YWKDKECPFRTDSRSKLMVIPTLIKWK 479
            W+D   P+R D R +L  +PTLI+W+
Sbjct: 86  TWRDPAHPWRADPRFRLTGVPTLIRWE 112


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +3

Query: 276 KLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD--REYWKDKECPFRTDSRSKL 449
           K+P GN+   +  + E + +   S+     + V  DV +   + WK    PFR       
Sbjct: 325 KMPKGNNEKENESDQEKIEKRIQSQ---QFLLVLDDVWEYHEDEWKTLLAPFRKSGTKGN 381

Query: 450 MVIPTLIKWKGVQRLEGSQCSNRELLQMLFEED 548
           MVI T  K K  + +E + CS +  L  L  ED
Sbjct: 382 MVIVTTRKQKIAKMVESTDCSIK--LDRLDHED 412


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 330 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLI 470
           +R YLS  DK  I +  D+ D + WK  EC    + R   ++  T I
Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRI 299


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 354 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 473
           +KS   +  DV  ++ WKD +C F +++ +  +++ T I+
Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQ 320


>07_03_1583 -
           27898375-27898436,27898455-27898539,27898621-27898768,
           27899009-27899028,27899135-27899236,27899743-27899812,
           27899956-27900012,27902324-27902484,27902742-27902761,
           27902997-27903069,27903077-27903169,27903456-27903496,
           27903597-27903858
          Length = 397

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 325 GSASTQSGHQLLPSGSFEPLK*KNTGGPRESIAR 224
           GSA+  S    LP+ +  P+  + TGGPR  + R
Sbjct: 14  GSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQR 47


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 267 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 365
           S +KL DG  W  DC + +P+    + +L+K +
Sbjct: 64  SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96


>01_03_0201 + 13758227-13758760,13758784-13759452
          Length = 400

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 199 VLKNFRNILVQLILVVPLYFFTLAVQNYLMAIAGAP 306
           +LK F    +Q   ++PL+FF   +  +L  + G P
Sbjct: 28  LLKEFEEHNLQFTSIIPLFFFYSYISKFLSDLQGQP 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,285,359
Number of Sequences: 37544
Number of extensions: 341794
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)