Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H11
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   5.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 760 RMFKYILMNFC*QCLIMALTVWLQTWL 680
           R F Y L+     C ++ +  W+  WL
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 760 RMFKYILMNFC*QCLIMALTVWLQTWL 680
           R F Y L+     C ++ +  W+  WL
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 748 YILMNFC*QCLIMALTVWLQTWLVY 674
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 748 YILMNFC*QCLIMALTVWLQTWLVY 674
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 748 YILMNFC*QCLIMALTVWLQTWLVY 674
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 118 KRGFFLMMXTMRELKCMSDGNDDGPQRENP 29
           KR FF+ M  +  L       DD P+R  P
Sbjct: 379 KRNFFITMFDLDFLTNACKKKDDKPKRRLP 408


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 231 QXAFQLFDS-RGDGKIHVAQIGDAL 302
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 231 QXAFQLFDS-RGDGKIHVAQIGDAL 302
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 561 QLLQGQEDSQGNINYENF 614
           Q +QG+E +  ++N ENF
Sbjct: 35  QEMQGKEKNSASLNSENF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,774
Number of Sequences: 438
Number of extensions: 3464
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)