Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H10
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.5  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   3.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 97  CXSCFASLGRKQCFT 141
           C +CF   G  +CFT
Sbjct: 693 CTTCFCENGNNKCFT 707


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 254 AARGAVPIPYKFNFYVIEKVKNAHSAHC 171
           A R  VP+    N    E + N+H  HC
Sbjct: 145 ALRKVVPLKKLCNNGTCEDIGNSHRCHC 172


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 27  CLTTFLPTLPKQHNHCQL 80
           C T   P L K+  +CQL
Sbjct: 78  CYTVLAPVLCKRQQYCQL 95


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 259 RLPLGALFQYHTNLTFTLSRKLKTRTQHIVRLRKHV 152
           R  L  L +YHT+ +   +  LK     I   +KH+
Sbjct: 445 RAKLSELLRYHTSASGDEACSLKDYVSRIKPNQKHI 480


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,003
Number of Sequences: 336
Number of extensions: 3497
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)