Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H10
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0171 - 1198403-1199059,1200022-1200258                           35   0.058
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652...    30   1.6  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    30   2.2  

>07_01_0171 - 1198403-1199059,1200022-1200258
          Length = 297

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -1

Query: 201 ES*KRALSTLXDSANMYV*ERETLLAP-ERSKAGXARKLAKTIDNDCVVLAELEGTL*DK 25
           ES +R L++L D  +    ERET+L+  +RS+     KL +    DC V+ E      +K
Sbjct: 69  ESLERQLASLQDLQHQQRYERETILSQIDRSRGCLLNKLKEYKGQDCEVIHEAASFAGEK 128

Query: 24  CKQRDGLL 1
            +  DGL+
Sbjct: 129 IEHDDGLM 136


>08_02_1409 -
           26864544-26864658,26864787-26864916,26864953-26865283,
           26866507-26866626,26867489-26867821,26867915-26868001,
           26868093-26868320,26868434-26868565,26868649-26868861,
           26869376-26869417,26869829-26869894,26870230-26870274,
           26870367-26870429,26870757-26870827,26871149-26871249,
           26871458-26871534,26872415-26872459
          Length = 732

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/105 (24%), Positives = 42/105 (40%)
 Frame = -1

Query: 684 GYNIKNAFHLQDSWRHTNILVQE*GERAIVLYKIYLTTVKCSKHCPVTS*ASIHCRSQTT 505
           GY  K + +L+  W+    ++   G       +I  T   CS H       + H     +
Sbjct: 248 GYLSKRSSNLRADWKRRFFVLDSRGMLYYYRKQINRTPGGCSSHPRSIGNPTEHGSGLLS 307

Query: 504 TLFLYQDDGFIKLETAMAYSIINFFTNSRVTVDTCKNDKRL*YHI 370
            LF     G I  E ++A   +N  T S + VD  ++D R  + I
Sbjct: 308 RLFSSHYHGIIHDEKSVARHTVNLLT-STIKVDAEQSDLRFCFRI 351


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 653 KTVGDTLTFSYKNKANVRSYCTKFI*LPSNVQNI 552
           KT GD     YK + +   + TK++ LPSN+ NI
Sbjct: 115 KTFGDVAVGKYKAETHSVDFQTKWLLLPSNLANI 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,920
Number of Sequences: 37544
Number of extensions: 327933
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)