Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H10
         (732 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101684-1|AAI01685.1|  333|Homo sapiens COX18 cytochrome c oxid...    31   4.3  
AY957565-1|AAY35061.1|  333|Homo sapiens mitochondrial COX18 pro...    31   4.3  
AY957564-1|AAY35060.1|  333|Homo sapiens mitochondrial COX18 pro...    31   4.3  
AM055750-1|CAJ20055.1|  253|Homo sapiens Cox18Hs1 protein protein.     31   4.3  
AK096310-1|BAC04758.1|  333|Homo sapiens protein ( Homo sapiens ...    31   4.3  
AY654628-1|AAT66025.1|  434|Homo sapiens IFGP6 isoform 2 protein.      30   7.4  

>BC101684-1|AAI01685.1|  333|Homo sapiens COX18 cytochrome c oxidase
           assembly homolog (S. cerevisiae) protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 281 WDRYVLSTFAARGAVPIPY-KFNFYVIEKVKN 189
           W   +LST A RGAV +P   +  Y++ KV+N
Sbjct: 83  WGSILLSTVALRGAVTLPLAAYQHYILAKVEN 114


>AY957565-1|AAY35061.1|  333|Homo sapiens mitochondrial COX18
           protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 281 WDRYVLSTFAARGAVPIPY-KFNFYVIEKVKN 189
           W   +LST A RGAV +P   +  Y++ KV+N
Sbjct: 83  WGSILLSTVALRGAVTLPLAAYQHYILAKVEN 114


>AY957564-1|AAY35060.1|  333|Homo sapiens mitochondrial COX18
           protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 281 WDRYVLSTFAARGAVPIPY-KFNFYVIEKVKN 189
           W   +LST A RGAV +P   +  Y++ KV+N
Sbjct: 83  WGSILLSTVALRGAVTLPLAAYQHYILAKVEN 114


>AM055750-1|CAJ20055.1|  253|Homo sapiens Cox18Hs1 protein protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 281 WDRYVLSTFAARGAVPIPY-KFNFYVIEKVKN 189
           W   +LST A RGAV +P   +  Y++ KV+N
Sbjct: 3   WGSILLSTVALRGAVTLPLAAYQHYILAKVEN 34


>AK096310-1|BAC04758.1|  333|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38991 fis, clone NT2RI2008622. ).
          Length = 333

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 281 WDRYVLSTFAARGAVPIPY-KFNFYVIEKVKN 189
           W   +LST A RGAV +P   +  Y++ KV+N
Sbjct: 83  WGSILLSTVALRGAVTLPLAAYQHYILAKVEN 114


>AY654628-1|AAT66025.1|  434|Homo sapiens IFGP6 isoform 2 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 254 AARGAVPIPYKFNFYVIEKVKNAHSAHCXTPQTCMF 147
           A RG+ PI Y  +FY+ EK+  +HSA C    + +F
Sbjct: 230 AQRGSPPILY--SFYLDEKIVGSHSAPCGGTTSLLF 263


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,048,598
Number of Sequences: 237096
Number of extensions: 1832133
Number of successful extensions: 3588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)