Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H09
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 355 PVHRFYVILYSLS*RWPVYLD 293
           PVHR+Y  +   S R PV L+
Sbjct: 242 PVHRWYKFIEGSSRRQPVQLN 262


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 173 GGTCVNVGCIPKK 211
           GG C  VGCI +K
Sbjct: 71  GGHCEKVGCICRK 83


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 194 GCIPKKLMHQAALLGESIHE 253
           GCI   L H+ AL+ +++ +
Sbjct: 54  GCIEACLFHRLALMNDNVFD 73


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -2

Query: 359  SPSSQILCDSVQPQLALASLS*SRPVRAPPNRMQP 255
            SP++ ++     P  +  ++S  +  + PP+  QP
Sbjct: 1258 SPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQP 1292



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 87   QAXPPEPPPITARA 46
            Q  PP PPP + +A
Sbjct: 1354 QPPPPPPPPSSGQA 1367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,978
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)