Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H08
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 246 3e-66
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 113 4e-26
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 79 6e-16
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 62 9e-11
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 62 9e-11
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 2e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 57 3e-09
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 55 1e-08
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 1e-08
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 54 2e-08
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 54 2e-08
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 50 5e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 49 7e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 5e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 6e-06
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 45 1e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 5e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 6e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 43 6e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 2e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 39 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 39 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.009
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 35 0.012
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.016
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 35 0.016
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 34 0.028
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.048
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.064
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.064
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 32 0.084
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 31 0.26
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.26
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.34
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.34
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 30 0.45
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 1.0
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 28 1.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 5.5
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 5.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 5.5
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 5.5
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 7.3
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 9.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 9.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 246 bits (602), Expect = 3e-66
Identities = 116/162 (71%), Positives = 130/162 (80%)
Frame = +3
Query: 327 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 506
ASLYVG+L +TEAMLFE F++ GPV SIRVCRD +TRRSLGYAYVNF D E+ALD
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 507 TMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKV 686
+N+ +IKGRP RIMWSQRDPSLRK G GNVFIKNLD +IDNKAL DTFSAFG ILSCKV
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 687 XQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYVG 812
DE G +KGYGFVHF++ AN +IE VNGML N K VYVG
Sbjct: 200 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Score = 94.3 bits (224), Expect = 2e-20
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++Y+ +L ++ITE + F G + S+ + +D + G+ +VN+ A++A+D
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 510 MNFDIIKGRPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLDKSIDNKA 638
+N KG+ + + +Q R+ LRK GV N+FIKNL +D++
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDER 379
Query: 639 LFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
L FSAFG I S K+ DE G SKG+GFV + T ANK++ ++N + GK +YV
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 82.6 bits (195), Expect = 6e-17
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++++ +L I L + FS G +LS +V D + GY +V+F A A++
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAIEH 227
Query: 510 MNFDIIKGRPIRIMW--SQRDPSLR----KSGVGNVFIKNLDKSIDNKALFDTFSAFGNI 671
+N ++ + + + S+R+ + K+ NV+IKNLD I + D F FG I
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 672 LSCKVXQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYVG 812
S + +D+ +G+GFV++ A K+++++N GK +YVG
Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVG 334
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 113 bits (271), Expect = 4e-26
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Frame = +3
Query: 327 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 506
A++Y+G+L +T+++LFE AGPV++I + RD + G+ + F D E A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 507 TMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSC-K 683
+N + G+PIR+ + +D + N+F+ NLD +D + L+DTFSA G ++ +
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQ 130
Query: 684 VXQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
V +DE G SKGYGFV +++ A+ +IE +N K + V
Sbjct: 131 VARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Score = 46.8 bits (106), Expect = 4e-06
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +3
Query: 276 IVLNSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSL 452
I +N + G + A+L+VG+L + E +L++ FS G ++ +V RD RS
Sbjct: 82 IRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSK 140
Query: 453 GYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWS 557
GY +V++ A+ A++ MN + +PI + ++
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 79.4 bits (187), Expect = 6e-16
Identities = 45/173 (26%), Positives = 91/173 (52%), Gaps = 8/173 (4%)
Frame = +3
Query: 318 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 497
Y +L++G+L +TEA + + ++T G + +++ R+ T + GY +V F P +A
Sbjct: 90 YQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASS 149
Query: 498 ALDTMNFDIIKG--RPIRIMWSQ----RDPSLRKSGVGNVFIKNLDKSIDNKALFDTF-S 656
A+ +MN I G ++ W+ R+ S+ K+ ++F+ +L +++ ++ F S
Sbjct: 150 AM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFAS 208
Query: 657 AFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYVG 812
+ + S K+ D +T S+GYGFV F E ++ ++ G + + + VG
Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVG 261
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 555 SQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHF 734
+Q P + VF+ L K + + L F FG I+ K+ KG GFV F
Sbjct: 291 AQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-----PGKGCGFVQF 345
Query: 735 ETEXXANKSIEKVNG 779
A +I ++ G
Sbjct: 346 VNRQSAEIAINQLQG 360
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 62.1 bits (144), Expect = 9e-11
Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
+++V L + +T L++ F AGPV ++ RD I+ RS G AYV F D+ +A
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH-EDSVQAAIA 299
Query: 510 MNFDIIKGRPIRIMWSQRDPS--------LRKSGVGNV-----FIKNLDKSIDNKALFDT 650
++ + G P+ + ++ + + L ++ + + N+ ++ ++ +
Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAI 359
Query: 651 FSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
F FG+I + +D+ SKG+G++ + A ++EK+NG G+ + V
Sbjct: 360 FEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 62.1 bits (144), Expect = 9e-11
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Frame = +3
Query: 303 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 482
P S +++VG L ++ + L ++F G ++ RV D + RS GY YV+F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 483 TDAERALDTMNFDIIKGRPIRIMWSQRDPS----LRKSGVGN-----------VFIKNLD 617
A+ A+ I GR + + S P+ + GN VF+ NL
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 618 KSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKVNGMLXNG 794
+ L F G+I S ++ D ++G KG+G+V F A K +E +NG G
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAG 433
Query: 795 K 797
+
Sbjct: 434 R 434
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 567 PSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETE 743
PS + VF+ L ++D++ L F +G I+ +V D ++G SKGYG+V FET
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 744 XXANKSIEKVNGMLXNGKMV 803
A ++ +G+MV
Sbjct: 315 EAAKAAVAANGTKEIDGRMV 334
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.3 bits (95), Expect(2) = 2e-09
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 321 PMASLYVGDLHSDITEAMLFEKFSTAGP-VLSIRVCRDMITRRSLGYAYVNFQQPTDAER 497
P S++VGDL ++ LF F + P S ++ D +T S Y +V F + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 498 ALDTMNFDIIKGRPIRIMWSQRDPSLRKS 584
AL M + +GRP+RI S P R S
Sbjct: 240 ALMHMQGYLCQGRPLRI--SVASPKSRAS 266
Score = 34.7 bits (76), Expect(2) = 2e-09
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
VF+ L ++ K L F FG IL+ K+ KG GFV + + A K+I +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP-----FGKGCGFVQYSEKSAAEKAINTMQ 353
Query: 777 GML 785
G L
Sbjct: 354 GAL 356
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
+++ NL + ++ L D F+ G+++ ++ + TG SKG+G V FE E A SIEK+N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 777 GMLXNGK 797
G G+
Sbjct: 342 GYRYGGR 348
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
V++ NL + L + GN+L+C++ G SKG + + T A +I+ ++
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 777 GMLXNGKMVYV 809
G++VY+
Sbjct: 128 NQKFMGRLVYI 138
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Frame = +3
Query: 594 NVFIKNLDKSI--DNKALFDTFSAFGNILSCKVXQ-DETGASKGYGFVHFETEXXANKSI 764
N+F+KNLD +I + + L + FS FG I SC + T SKGYGFV F A ++I
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 765 EKVNGMLXNGKMVYV 809
+NG+L K ++V
Sbjct: 480 NTLNGVLFGKKRLFV 494
Score = 37.9 bits (84), Expect = 0.002
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +3
Query: 297 MNPGPPSYPM---ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYA 461
+ P P S P +L+V +L +I L E FS G + S + T S GY
Sbjct: 406 VTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 462 YVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 641
+V+F P +A +A++T+N + + + + ++++ RK + +F ++ + + +L
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKRED-RKKRLSAIFSQSYPPVVPSPSL 524
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +3
Query: 327 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCR-DMITRRSLGYAYVNFQQPTDAERAL 503
A+++VG+L +TE++L+ F G ++S+ + R + RS YA+V F +P DA+ A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS--YAFVEFDEPEDAKEAM 63
Query: 504 DTMNFDIIKGRPIRI 548
+ MN+ I+ R IR+
Sbjct: 64 ENMNYSILCDRCIRV 78
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
V + NL S+ L++ F FG I+S + + E + Y FV F+ A +++E +N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 54.4 bits (125), Expect = 2e-08
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
+++G L+ + T+ L + F G VL V RD T RS G+ ++ F+ P +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 513 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQ 692
+ + G+ I + P + +F+ + + + F+ FG +L +
Sbjct: 225 HH--LDGKIIDP--KRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMM 280
Query: 693 D-ETGASKGYGFVHFETE 743
D +TG +G+GFV +E E
Sbjct: 281 DKDTGRPRGFGFVTYENE 298
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 591 GNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDE-TGASKGYGFVHFETEXXANKSIE 767
G +FI L+ + +L D F FG +L C V +D TG S+G+GF+ F+ N+ +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS 222
Query: 768 KVNGMLXNGKMV 803
K + + +GK++
Sbjct: 223 KEHHL--DGKII 232
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 54.0 bits (124), Expect = 2e-08
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +3
Query: 558 QRDPSLRKSGV--GNVFIKNLDKSIDN--KALFDTFSAFGNILSCKVX-QDETGASKGYG 722
+ PS+ S + N+++KNLD ++ L D FS FG+ILS + +G SKGYG
Sbjct: 369 ESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYG 428
Query: 723 FVHFETEXXANKSIEKVNGMLXNGKMVYV 809
FV F A ++ + +NGM+ K ++V
Sbjct: 429 FVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = +3
Query: 300 NPGPPSYPM--ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 467
+P P+ P+ ++LYV +L + ++ L + FS G +LS + + S GY +V
Sbjct: 371 SPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
Query: 468 NFQQPTDAERALDTMNFDIIKGRPIRIMWSQR-DPSLRK--SGVGNVFIKNLDKSIDNKA 638
F+Q A RA DT+N ++ + I + +++R +R+ + N DNKA
Sbjct: 431 AFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKA 490
Query: 639 LF 644
LF
Sbjct: 491 LF 492
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 282 LNSIKMN-PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSI 416
+N+ K++ PG +++YVG++ S +++ + + FS G V SI
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 49.6 bits (113), Expect = 5e-07
Identities = 31/79 (39%), Positives = 43/79 (54%)
Frame = +3
Query: 312 PSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDA 491
PS P + +VG+L D+TE L + F V SIR+ D +T RS G+ YV F+
Sbjct: 89 PSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTL 146
Query: 492 ERALDTMNFDIIKGRPIRI 548
AL D++ GRP+RI
Sbjct: 147 SAALALSGEDLM-GRPVRI 164
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 49.2 bits (112), Expect = 7e-07
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Frame = +3
Query: 327 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 506
++L+V +L + L FS GP+ V + T + GY +V F DA+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 507 TMNFDIIKGRPIRIMW------SQRD--------PSLRKSGVGNVFIKNLDKSIDN-KAL 641
+ + GR +R+ + S+ D ++R+ + I+NL SI + L
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 642 FDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
FS FG + K+ G G+ FV + A +++ +NG +G+ + V
Sbjct: 125 EPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 506
+++V +L + TE L+ F GP+ ++ +D T RSLG ++ F+ D + L+
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 32.7 bits (71), Expect = 0.064
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIE 767
VF++NL + L++ F FG + K+ +D T S G GF+ F E +E
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 444 RSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWS 557
R G+A+V + AE A++++N I GRPI + W+
Sbjct: 146 RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 663 GNILSCKVXQDETGA--SKGYGFVHFETEXXANKSIEKVNG 779
G + KV ++ GA SKG+GF+ F + A ++ +NG
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNG 561
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 5e-06
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Frame = +3
Query: 438 TRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSG---VGN-VFI 605
T G +N Q A L +MN D + +++P G +GN +F+
Sbjct: 46 TDSDAGSIAMNVHQLDTAGEPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFV 105
Query: 606 KNLDKSIDNKALFDTFSAFGNILSCKVXQDE-TGASKGYGFVHFETEXXANKSIEKVNGM 782
+ + L FS FG + ++ ++ T AS+G+GF+ F T A +I+ +N
Sbjct: 106 SGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQ 165
Query: 783 LXNGKMVYV 809
G+++ V
Sbjct: 166 EFYGRVLNV 174
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +3
Query: 321 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 500
P ++++ L D E+ + +F+ GP+ IRV R+ +T +S+GYA+V F++ D + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 501 LDTMNFDIIKGRPI 542
++ GR I
Sbjct: 158 YKASAGLMLNGRRI 171
Score = 36.3 bits (80), Expect = 0.005
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = +3
Query: 540 IRIMWSQRDPSLRKSGVGN----VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDE-TG 704
+R M DP + +G+ +F+ L + F+ +G I +V +++ TG
Sbjct: 79 LRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTG 138
Query: 705 ASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
S GY FV FE E + + G++ NG+ + V
Sbjct: 139 KSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKV 773
+F+ L+ ++ L FS FG I+SC+V +D ETG S Y F+ F+ + K+ K+
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 774 NGMLXNGKMVYV 809
+L + ++V
Sbjct: 306 QNVLIDDSRIHV 317
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
++VG+L + E L+ F G + +R+ RD T G+AY+ F+ ++AL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 513 NFDIIKGRPIRIM 551
+ +GR +RIM
Sbjct: 332 EKKMPEGRTLRIM 344
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
++VG++ D++E + E F+ GPV + ++ D T GY + F A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 513 NFDIIKGRPIRIMWSQRDPSLRKS 584
N + R IR+ + DP +S
Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQS 92
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 591 GNV-FIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSI 764
GNV F+ N+ + + + + F+ G + + K+ D ETG+ KGYGF F ++
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 765 EKVN 776
K+N
Sbjct: 66 RKLN 69
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 42.7 bits (96), Expect = 6e-05
Identities = 35/152 (23%), Positives = 62/152 (40%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++Y+ L + ++ L + G V S + DM T GY + F++ A +
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISA 356
Query: 510 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVX 689
M + + +S R SL+ + N++I NL + + F I+S +V
Sbjct: 357 MTLCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLFKP-SKIISNRVL 415
Query: 690 QDETGASKGYGFVHFETEXXANKSIEKVNGML 785
+D S+G GF + A I K N +
Sbjct: 416 RDSKEQSRGVGFARMQDRKTAEDIINKFNNFV 447
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 576 RKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXA 752
+K GV +++ L K + FS FG +L ++ ++ +TG+SK Y F+ FE+ A
Sbjct: 102 KKKGV--LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVA 159
Query: 753 NKSIEKVNGMLXNGKMV 803
N E ++ L GK++
Sbjct: 160 NVVAETMHNYLLYGKLL 176
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
LYVG L E + FS GPVL +R+ R+ T S YA++ F+ A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 513 NFDIIKGR 536
+ ++ G+
Sbjct: 167 HNYLLYGK 174
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP-TDAERALDT 509
L+VG+L D + L F AG V S+R+ D + R GYA+V F P TD
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 510 MNFDIIKGRPIRI 548
+ I K R I I
Sbjct: 154 FHHTIYKERKINI 166
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 38.7 bits (86), Expect = 0.001
Identities = 25/102 (24%), Positives = 45/102 (44%)
Frame = +3
Query: 285 NSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAY 464
NS + PG + P A + V ++ + + L + F G G A+
Sbjct: 189 NSTPVEPGEDTIPTA-IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAF 247
Query: 465 VNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGV 590
NF +P +A+ + T+N I GR +R+ W ++ P+ + V
Sbjct: 248 ANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKV 289
Score = 29.1 bits (62), Expect = 0.79
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Frame = +3
Query: 483 TDAERALDTMNFDIIK-GRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSA 659
T AE +LD N IK G + +P + +KN+ S++ L D F
Sbjct: 166 TSAEPSLDAFNSTQIKAGSTANSNSTPVEPGEDTIPTA-IVVKNIPFSLEKDTLLDHFKQ 224
Query: 660 FGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKVNGMLXNGKMVYV 809
G + G +G F +F A ++ +NG NG+ + V
Sbjct: 225 LGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRV 275
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Frame = +3
Query: 447 SLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRD----PSLRKSGVGN-----V 599
S+G+ +V F+ A A+ MN ++ G + I S + +RK +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKI 723
Query: 600 FIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXA 752
IKNL K + A+G + S +V + +++G+ F F T A
Sbjct: 724 LIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREA 774
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
L++ +L E L F G + + + D T G+AY++F DA RA +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 513 NFDIIKGRPIRIM 551
+ +GR + ++
Sbjct: 385 DAKPFQGRLLHVL 397
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSC----KVXQDETGA--SKGYGFVHFETEXXANK 758
+++KNL+ S + F LS K G S G+GFV F+ + A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 759 SIEKVNGMLXNG 794
++ +NG + +G
Sbjct: 681 AMHAMNGFVLDG 692
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKV 773
++I NLD ++ + FS FG + + +D ETG SKG+ F+ +E + +++ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 774 NGMLXNGKMVYV 809
+ ++V V
Sbjct: 93 TNVKLLDRLVRV 104
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 321 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 500
P +YVG++ ++ E + + F +GPV S ++ D + + GY + + P A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 501 LDTMN 515
+ +N
Sbjct: 63 VRNLN 67
Score = 33.1 bits (72), Expect = 0.048
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKV 773
V++ N+ + + + D F G + S ++ D E+G KGYGF + A ++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 774 N 776
N
Sbjct: 67 N 67
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 512
+ V +H + TE + + F+ GPV ++ + D T GYA + + A++A+D
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 513 NFDII 527
N ++
Sbjct: 72 NLSLL 76
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 603 IKNLDKSIDNKALFDTFSAFGNILSCKVXQD-ETGASKGYGFVHFETEXXANKSIEKVNG 779
+ NL + L D F FG I + +D ETG +KG+ FV + A K+ ++++G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.7 bits (76), Expect = 0.016
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++Y+G++H+D T + G + +IR ++ +V F P A R +
Sbjct: 324 TVYIGNIHADTTIEEICNAVR-GGLLHNIRYLQEK------HICFVTFVDPVSAFRFFEM 376
Query: 510 MNFD--IIKGRPIRIMWSQRD---PS---LRKSGVG--NVFIKNLDKSIDNKALFDTFSA 659
N +I+ R ++I W + PS L +G N++I N D S+ + L + F
Sbjct: 377 SNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEE 436
Query: 660 FGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKV 773
FG I ++ K FV+F + A +I+++
Sbjct: 437 FGEIEYVNFFRE-----KNCAFVNFTSLASAINAIDRI 469
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++++G+L + ITE + E GP+ I++ +T R++ A+V+F A +A+
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKI----VTERNI--AFVHFLNIAAAIKAVQE 260
Query: 510 MNFDIIKGRPIRIMWSQR 563
+ P+ WS+R
Sbjct: 261 L--------PLNPKWSKR 270
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 34.7 bits (76), Expect = 0.016
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 582 SGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKS 761
+G NV I+NL + + T FG IL+C+V D G K V F T A +
Sbjct: 97 AGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQV-NDSQG--KVRASVRFSTLASAQQV 153
Query: 762 IEKVNGMLXNG 794
++K++G+ +G
Sbjct: 154 VQKLDGVTADG 164
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.9 bits (74), Expect = 0.028
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 453 GYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGV 590
G A+ NF P +A+ + +N I GR +R+ W ++ P + V
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.048
Identities = 29/146 (19%), Positives = 64/146 (43%)
Frame = +3
Query: 330 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 509
++ V +L SDI+E L F G ++ I + D ++ + A + F + ++ A T
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILED--NQKDVKVAQIEFSETSEV-LAAKT 647
Query: 510 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVX 689
+ I+G I S++ N+++ N + D + FSA+GN++ +
Sbjct: 648 RDLKSIRGHEI---------SVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFP 698
Query: 690 QDETGASKGYGFVHFETEXXANKSIE 767
++ + +V A+ +++
Sbjct: 699 SLRYNTNRRFCYVQMRKPDEAHNALQ 724
Score = 32.7 bits (71), Expect = 0.064
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 318 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 497
Y LYV ++ + E + F G V S+R+ + + GY + Q DAE
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ--DAEN 811
Query: 498 ALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 629
AL + R + ++ S+ SL K+ V + + L KS +
Sbjct: 812 ALSAAGKQ-LGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFE 854
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.7 bits (71), Expect = 0.064
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 570 SLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQ-DETGASKGYGFVHFETEX 746
S +K +F+ NLD + L + F G I ++ ++TG KG+GFV F
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Query: 747 XANKSIE 767
K++E
Sbjct: 281 TCMKAME 287
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.064
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 522 IIKGRPIRIMWSQRDP---SLRK-----SGVGNVFIKNLDKSIDNKALFDTFSAFGNILS 677
I GRP+++ +++ P S++ + NVFI NL S K + + F FG I
Sbjct: 268 IFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEH 327
Query: 678 CKVXQDETGASKGYGFVHF 734
K+ + K FVHF
Sbjct: 328 IKIL-----SKKNIAFVHF 341
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.084
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 375 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 542
+F +FS G V + VC D + +G YV F+ A+ A+D +N RP+
Sbjct: 80 MFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPV 134
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
+FI N+ K +D+ + G + S + D + +GF FE+ ++++E +N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 30.7 bits (66), Expect = 0.26
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 321 PMASLYVGDLHSDITEAMLFE----KFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 488
P +LY+ ++ I ML F + G V+ ++ + T R G A+V F +
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLEN 80
Query: 489 AERALDTMNFDIIKGRPIRIMWSQ 560
A RAL + + G+P+ I +S+
Sbjct: 81 ASRALKDLQGYPLYGKPMMIQYSK 104
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.34
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 321 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 500
P +L+VG+L S ++ + FS G V SIR M++ + A++NF A+
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIR----MLSHKH--SAFLNFDSVETAKHV 638
Query: 501 LDTMN 515
L+ +N
Sbjct: 639 LEELN 643
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKVN 776
+++ NL + + TFSA+G + S ++ + A F++F++ A +E++N
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSA-----FLNFDSVETAKHVLEELN 643
Query: 777 G 779
G
Sbjct: 644 G 644
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.34
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 333 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL-GYAYVNFQQPTDA-ERALD 506
+YVG L S I + L +FS G V ++ + ++ +AY+NF+ D ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 507 TMNFDIIKGRPIRI 548
++ KG +RI
Sbjct: 67 YLSNATFKGSKLRI 80
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 576 RKSGVGNVFIKNLD----KSIDNKALFDTFSAFGNILSCKVXQDE 698
+K+G G+V I +L+ ++I NK+ FS F N++ K ++E
Sbjct: 215 QKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGKYLKEE 259
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/72 (18%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 597 VFIKNLDKSIDNKALFDTFSAFGNILSCKVX-QDETGASKGYGFVHFETEXXANKSIEKV 773
+ ++NL +++ + + + F +G I + ++ +KGY ++ + A +++K+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 774 NGMLXNGKMVYV 809
N +G+ ++V
Sbjct: 161 NNAELDGEELFV 172
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 663 GNILSCKVXQDETGASKGYGFVHFETEXXANKSIEKV 773
G I + ++ +D+ KG FV F+ ANK +EKV
Sbjct: 181 GPISAVRMRRDDDKKFKGSVFVEFKEPDVANKFLEKV 217
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.5
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +3
Query: 546 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVXQDE-TGASKGYG 722
I + + SL VF+ N+ + ++ L F +FG + + + TG S G
Sbjct: 79 INYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLC 138
Query: 723 FVHFE-------TEXXANKSIEKVNGMLXNGKMVYV 809
+ F+ A ++++ NG+ +GK + V
Sbjct: 139 CISFDKRSSISVAAHSAKIAVQQANGLRFSGKPLSV 174
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 5.5
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +3
Query: 339 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 518
V +LH + E + F P+ I + D RS G V F+ DAE A T+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDR-AGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 519 DIIKGRPIRIMWSQRDPSL 575
+KG I+I + PSL
Sbjct: 147 TNLKGSEIQIS-KKSPPSL 164
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 GDLHSDITEAMLFEKFSTAGPVLSIRV-CRDMITRRS 449
G H+++ LF+K TA PVL R+ +D RRS
Sbjct: 610 GKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRS 646
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 696 ETGASKGYGFVHFETEXXANKSIEKVNG 779
E +G+GFV F +++IE++NG
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNG 280
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 590 NSGFAQGRITLGPHDSNGSSFDNIKVHG 507
N +A GR+T D NG DN + G
Sbjct: 135 NDDYALGRLTKDQKDENGDKVDNDLLEG 162
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 756 YLQXXQFQNEQNHTLLKHQSHLEXLYNS 673
Y+Q F ++ +H HQS LE L ++
Sbjct: 50 YIQRHYFSSQSHHVTYLHQSPLEKLVSN 77
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 559 NVILPCANPELGMFL*KTLINLLTTRLYLIH 651
NV +P +P+L F +IN +T+R +H
Sbjct: 356 NVFVPPEDPDLPAFFWDPIINPITSRQLTLH 386
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 288 SIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFST 395
S+ +P PP +P++ + D+ +D+ + L+E + +
Sbjct: 26 SLGADPLPPVHPLSLKNLVDIDTDLISSQLYELYDS 61
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 520 ILSKEDPLESCGPNVILPCA 579
+LS+ +PL C PN++L A
Sbjct: 496 VLSRLNPLRYCSPNIVLQFA 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,668
Number of Sequences: 5004
Number of extensions: 62759
Number of successful extensions: 241
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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