Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H07
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 125 8e-30
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 85 1e-17
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 38 0.001
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 2.8
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 3.7
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 8.6
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 125 bits (301), Expect = 8e-30
Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 1/171 (0%)
Frame = +3
Query: 222 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 398
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ RG++ + S
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 399 YKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 578
Y+ + + E A LGW VE+ Q++ ++ DDIMD S RRG PCWY P VG
Sbjct: 61 YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118
Query: 579 CAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWSTSMGQHLXHVT 731
A ND+ ++ S+++ LK +FR Y+ + ELF++ + T +GQ L +T
Sbjct: 119 IAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLT 169
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 84.6 bits (200), Expect = 1e-17
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = +3
Query: 240 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 416
KK D P V+ ++ + P+ + L + N +GGK+ RG+ + S ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 417 PEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDS 596
E + E + A LGW +E+ Q ++ DDIMD S RRG+ CWY VG+ A N+S
Sbjct: 72 RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128
Query: 597 LLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWSTSMGQ 713
L+ + + ++ FR P Y+ + + F E + T +GQ
Sbjct: 129 QLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQ 167
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 165 DADERYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKML 344
D+D+ N S+N T + NL+ + KK +LP +TLQ K KL G K L
Sbjct: 247 DSDQSMTNISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSL 301
Query: 345 HYNLVGGKHTRGI 383
H +++ G+ +G+
Sbjct: 302 HKSVIEGEKIKGV 314
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 429 TEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 545
T L +L EM ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 596 RVVKGACDAHFRTPIPTGHAASNA*TIHNVIQHNAICLKHFDTPSQLTSHFQSMF 432
R++ G P+ HA S+ TI ++I L+ +PS+ + F+S F
Sbjct: 545 RIISGPLGLVHPDPLVASHARSSMQTIESLIHPRFPPLQKHLSPSEFENTFESRF 599
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 105 SELIEGIFHIKEIVKCSR*LDADERYKNNSANMTTASKNLEIINEKKMFDD 257
SE ++ + I +V +R + KN+S+N +T N+++++ DD
Sbjct: 29 SEELDELPDISSLVPSARAQSRKQYLKNDSSNSSTYRWNIDLLSSTATIDD 79
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 306 EVPQIGDWLKKMLHYNLVGGKHTRGI 383
E+ +I D+L+ H+ +GGK RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 421 SGFSIVLYEITVVIPLVCLPPTK 353
+G L+E++V +PL +PP+K
Sbjct: 375 TGVEAPLFELSVSMPLTLIPPSK 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,959
Number of Sequences: 5004
Number of extensions: 69078
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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