Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H07
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    77   2e-14
Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    29   4.6  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    29   4.6  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    29   4.6  
CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical ...    28   6.0  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   8.0  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 36/129 (27%), Positives = 71/129 (55%)
 Frame = +3

Query: 333 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 512
           + +    ++GGK++R    V + + ++   +     L+  C+    +E+ Q++ ++ DDI
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDETQELQAVCEAAATLEIIQSFYLIADDI 101

Query: 513 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 692
           MD S  RRG PCW+RR  VG++ A ND+ ++ S + + L+     + N  ++ E + ++ 
Sbjct: 102 MDNSETRRGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRKSK 160

Query: 693 WSTSMGQHL 719
             T +GQ L
Sbjct: 161 QKTLIGQFL 169


>Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical
           protein F40F9.8 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 234 NEKKMFDDLLPEVIMTLQNKSKLSEVPQ 317
           N +  FDDLLP V++ +QN+    + P+
Sbjct: 42  NGRVSFDDLLPRVVLAIQNEEWKDDTPK 69


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +3

Query: 303  SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-----EKVTEHTLK-MACKL 461
            S V  + D +KK        G+ H RG   ++ Y+  E       +K TEH +  + C  
Sbjct: 874  SSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGCVMCSP 933

Query: 462  GWCVEMFQAYCIVLDDI 512
            G C  +F+AY ++ D++
Sbjct: 934  G-CFSLFRAYALMDDNV 949


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +3

Query: 303  SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-----EKVTEHTLK-MACKL 461
            S V  + D +KK        G+ H RG   ++ Y+  E       +K TEH +  + C  
Sbjct: 874  SSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGCVMCSP 933

Query: 462  GWCVEMFQAYCIVLDDI 512
            G C  +F+AY ++ D++
Sbjct: 934  G-CFSLFRAYALMDDNV 949


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +3

Query: 231 INEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTI 410
           I    M DD+   ++   + + KL +  ++ DW ++ + +NL        +   ++   I
Sbjct: 81  IKHSVMIDDVQKVIVEQKEKRDKLRKQVRLHDWREQKVQFNLAQYHSFADVINYLNSLAI 140

Query: 411 EKPEKVT 431
             PE V+
Sbjct: 141 TYPELVS 147


>CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical
           protein C50E10.9 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -1

Query: 501 AQCNMPETFRHTIPAYKPFSKYVR*LFPVFQLFCMKSQ*LFLLYVYRQPNCNEASFST-- 328
           A+ N  E F + +     +S  +  L  +F + C K   L  LY++R+   N  S ++  
Sbjct: 275 AESNYWEVFGYILDFVVSYSNCIIVLIVIFSVPCWKKSFLRPLYMFRRMQSNRVSMASQE 334

Query: 327 -NPLFGALQITWICF 286
            +P   A QI+ I F
Sbjct: 335 KDPEEDARQISSIYF 349


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 456 KLGWCVEMFQAYCIVLDDIMDGSSVRRG 539
           K+G   EM     +V DD++D ++ RRG
Sbjct: 137 KIGMIAEMIHTASLVHDDVIDEANTRRG 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,581
Number of Sequences: 27780
Number of extensions: 390107
Number of successful extensions: 1039
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)