Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H06
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    29   0.049
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    29   0.049
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    29   0.049
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 208 ETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 366
           + SS     +  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 120 DISSTRGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 169


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 208 ETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 366
           + SS     +  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 68  DISSTRGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 117


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 208 ETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 366
           + SS     +  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 251 DISSTRGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 300


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 220 DNQKGSENPMDTDEGPLINENSNGLSHLLTE 312
           DNQ+    P+D + G L    +N LS   T+
Sbjct: 484 DNQQLELKPIDLNSGDLSMLETNNLSETFTQ 514


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 588 LTFGLPTVCV*NCFVGCRVTLNRIIFSQC 502
           + FG P +      +GC +  N I+FS C
Sbjct: 251 MLFGFPII------IGCLIQFNTIVFSFC 273



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 546 VGCRVTLNRIIFSQC 502
           +GC +  N I+F+ C
Sbjct: 540 IGCLIQFNTIVFAFC 554


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 574 QSESQHATDSNIGEINENSGNDSNFAT 654
           ++E++      + +IN NSG+ ++ AT
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSAT 28


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 574 QSESQHATDSNIGEINENSGNDSNFAT 654
           ++E++      + +IN NSG+ ++ AT
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSAT 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,271
Number of Sequences: 336
Number of extensions: 3054
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)