Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H06
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 46 4e-06
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 34 0.023
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.66
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 29 0.66
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 0.66
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 28 1.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 28 1.5
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 1.5
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 1.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.6
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 27 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 3.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.6
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 4.6
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 4.6
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 4.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 6.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 6.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.1
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 46.4 bits (105), Expect = 4e-06
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +1
Query: 202 EDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNA 381
E E+SS++ S + D++ + + S +E E +S D SS+ ++ ++
Sbjct: 190 ESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 249
Query: 382 VEL-SAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVL 558
+ S+ S+ D + + S S + D+ +DS +S +E +S SDS S +
Sbjct: 250 EDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE-SESSSEDSDSTSSSSDS 308
Query: 559 DTDSRQSESQHATDSNI-GEINENSGNDSNFATEHINLNVDKSXQL 693
D+ S + TD+ GE++ S +S + E ++ + S ++
Sbjct: 309 DSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKI 354
Score = 45.6 bits (103), Expect = 7e-06
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = +1
Query: 202 EDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNA 381
ED SS + SE+ +++ + +S+ S +EG +S ++ ES +S++ ++
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN-DS 236
Query: 382 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQ--SDSASHKAV 555
S+ S + + S+ S +++ + S NS+ +ED+S SDS S +
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 556 LDTDSRQSESQHATDSNIGEINENSGNDSNFATE 657
D+DS S S +DS+ + NS D+ + E
Sbjct: 297 EDSDSTSSSSD--SDSSSSSEDGNSNTDTTTSGE 328
Score = 40.3 bits (90), Expect = 3e-04
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Frame = +1
Query: 202 EDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNA 381
E E+SS+ S + ++ +N + S +E E +S D+ D SS+S+
Sbjct: 154 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDS--DSSSSSSDS---- 207
Query: 382 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDN---SIQSDSASHKA 552
E + S G ++ ++S +++ + +DS + + +ED+ S SDS S +
Sbjct: 208 -ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266
Query: 553 VLDTD----SRQSESQHATDSNIGEINENSGNDSN 645
D+D S SE ++DS+ E +E+S DS+
Sbjct: 267 SKDSDSSSNSSDSEDDSSSDSSDSE-SESSSEDSD 300
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/147 (19%), Positives = 71/147 (48%)
Frame = +1
Query: 205 DETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAV 384
DE+ S + + + D D +++ + S ++ +S D+ + SS + ++
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169
Query: 385 ELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDT 564
+ S+ + +N+ S+DS + + + S + + +E +S SDS+S + ++
Sbjct: 170 SSESESSSE--DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 227
Query: 565 DSRQSESQHATDSNIGEINENSGNDSN 645
+S ++ ++ S+ E +E+S DS+
Sbjct: 228 ESSSEDNDSSSSSSDSE-SESSSEDSD 253
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 280 NSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDI 459
NSN H ++ + ++ A + FL +E S ++ N P DS +
Sbjct: 77 NSNNEKHENSDKKIHTTVLASGHEDSDYSTFLPVIETSKVKDANHFPPNYPEPKNDS--V 134
Query: 460 GDNAVTFPNDSLNSA 504
N FPNDS++SA
Sbjct: 135 SSNIDEFPNDSISSA 149
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.1 bits (62), Expect = 0.66
Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Frame = +1
Query: 250 DTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAG--DYLEN 423
D P EN + + + N ++++++SN + L + + D +++
Sbjct: 269 DNIREPQEEENDVDVDEIFNRQQLNQPALDLNDANSSNSVPVEFNSLHSQNVDYRDEVDS 328
Query: 424 NGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSD--SASHKAVL-DTDSRQSESQHA 594
P+F+ D ++ + ++ A+T+ N I+SD H+ ++ + D ++
Sbjct: 329 LRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNNDDENGNNESE 388
Query: 595 TDSNIGEINEN 627
+ I E N N
Sbjct: 389 NEEVIEEDNLN 399
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/90 (22%), Positives = 38/90 (42%)
Frame = +1
Query: 415 LENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHA 594
+ N P F+ + ++ N FPND + D +SAS++ + + +
Sbjct: 311 ISNQSPVFTLTTMELTRN---FPNDIDVESSIVDKQYSVNSASNELRVMEKLNELDELAE 367
Query: 595 TDSNIGEINENSGNDSNFATEHINLNVDKS 684
D+ ++EN+ S +H+ L D S
Sbjct: 368 EDNYEESVDENANRKSKVLAQHLELLADCS 397
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 29.1 bits (62), Expect = 0.66
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Frame = +1
Query: 235 SENPMDTDEGPLINENSNGLSHLLTEGEF-NSVDAAVDESSTSNQCFLNAVELSAGSA-- 405
+ + M T E LI+ L L+ EF N+ ++ + S NQ ++ ++ + S
Sbjct: 564 ARSSMQTIES-LIHPRFPPLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVDSQSEYK 622
Query: 406 -GDYLENNGPRFSTDSFDIGDNAVTFPND--SLNSALTEDNSIQSDSASHKAVLDTDSRQ 576
L + P F T+S S ++ L +++ S++ ++ L T S
Sbjct: 623 ESSILAPSNPPFETESITDSTEIEGIKESFASTDTGLQNNSTATSENKRSESEL-TMSNV 681
Query: 577 SESQHATDSNIGEINENSGNDSNFATEHINL 669
++ + EIN + + N T+HIN+
Sbjct: 682 LSNEGDRNEEGSEINSSQPSTINHGTDHINI 712
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 421 NNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAV 555
N P S DSF G + P S S++ +NS+Q A H V
Sbjct: 255 NASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQPVAYHAFV 299
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +1
Query: 328 VDAAVDES-STSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPN----DS 492
V+ A D + +T+ F V GS G N R D + N+ F D+
Sbjct: 244 VEYAEDSAYNTNTSLFYGVVGHQNGSNGFISPKNLTR---DLLNYKANSTLFGGVTIWDT 300
Query: 493 LNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNIG 612
+A++ DNS ++ + +LDT S+ S S+ + DS+ G
Sbjct: 301 SLAAMSYDNSSETFVEAIHKILDTKSKHSSSKSSHDSSQG 340
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 559 DTDSRQSESQHATDSNIGEINENSGNDSNFATEH 660
+ D +S S HAT +IG+ + S + N +++H
Sbjct: 55 EEDDMESSSYHATQEDIGDDDSRSESTRNRSSQH 88
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 382 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAV 555
+ L + SA D L+N+GP +T S ++ T+P DSLN+ +S +SAS A+
Sbjct: 157 LSLRSASALDVLKNSGP--ATTSLL---SSTTYPFDSLNAFNEPSHSHVPNSASSTAL 209
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 532 DSASHKAVLDTDSRQSESQHATDSNIGEINENSGNDS 642
D+ +K L+ + Q + HAT SN G + +SG D+
Sbjct: 474 DTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDN 510
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 211 TSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESST 357
+SS++ + P D D +N+NS+ L + + +D SS+
Sbjct: 46 SSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSSSS 94
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +1
Query: 385 ELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDT 564
+ S G G N P S+D + P S +S+LT++ + S+ D+
Sbjct: 287 DFSKGDRGLSFVNLSPNIKATSYDRLSTVINEPFISRSSSLTDERGLADSGNSYHHFSDS 346
Query: 565 D 567
D
Sbjct: 347 D 347
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 430 PRFSTDSFDIGDNAVTFPNDSLNSALT---EDNSIQSDSASHKAVLDTDSRQSESQHATD 600
P T SF + + ++ + + S LT +D S+ + +AV D + + A
Sbjct: 521 PVAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQEEAVSDLEDNSDIDESANA 580
Query: 601 SNIGEINENSGNDSNFATEHINLNVDKS 684
+EN G+D +E+ ++ D S
Sbjct: 581 GKDFSDDENIGSDEEDESEYDPMDTDTS 608
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.5
Identities = 28/149 (18%), Positives = 58/149 (38%)
Frame = +1
Query: 259 EGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPRF 438
+G ++NEN +G + ++ D+S +++ +S A D + +
Sbjct: 1846 QGDIVNENDENYEDSEDDGVYEEMEFEDDQSGSADSV------VSEDDADDVMYS----- 1894
Query: 439 STDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNIGEI 618
D D + F D +++ D+S +++SH V+ D ++Q E
Sbjct: 1895 -----DNDDMNIEFMVDEQDASSQNDDSSFDEASSHGDVISIDEEDLDNQGEEFEWEDED 1949
Query: 619 NENSGNDSNFATEHINLNVDKSXQLEIVE 705
N +SG + + + S E +E
Sbjct: 1950 NASSGYEDELDYNEDEVGENDSTTFEAME 1978
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 493 LNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSN 606
L+ LT+D + S K V TD+ S + H T N
Sbjct: 336 LSPCLTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDN 373
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.6
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Frame = +1
Query: 292 LSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENN-GPRFSTDSFDIGDN 468
+ H G + + D SSTSN+ AG+ Y + N DSF
Sbjct: 931 VQHFSRYGLLDDEEEENDMSSTSNE---------AGNLKKYDQPNLKVSGKNDSFVTHHT 981
Query: 469 AVTFPNDSLNSALTEDNSIQSDSASHKAVLDT-DSRQSESQHATDSNIGEINENSGN 636
FPNDS N L DSA + DT S++ + ++DSN+ E + N
Sbjct: 982 PGAFPNDSKNKELNRHFLKVDDSA---PLDDTFMSKKVKLDFSSDSNVSERGDYDDN 1035
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 508 TEDNSIQSDSASHKAVLDTDSRQSESQHATDS 603
TED++ +D ++ + + S SES+HA D+
Sbjct: 55 TEDDADDADDVNNYIMSPSSSLSSESEHALDA 86
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 388 LSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQS 531
L +GSA + L + F +D+GD N ++ SA+ ++ SI S
Sbjct: 637 LFSGSAQELLSSIIFVFVKHPYDVGDRVDVMINGTVTSAMVKEISIMS 684
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 271 SKDLRLYPWDFQILSDYRSLFHLPC 197
SK+L W F++L +L+ LPC
Sbjct: 18 SKNLNKLRWKFRLLESQFALYSLPC 42
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -3
Query: 347 SSTAASTLLNSPSVSK*ESPLEFSFIKGPSSVSMGFSDPF*LSELVSSS 201
SST +S+LL+ SVS P S SS S+ SDP S S S
Sbjct: 131 SSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLS 179
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 499 SALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNIGEINENSGNDSNFATEHINLN-V 675
S L E+N S K+ T + + D +N+ GN +N E IN + +
Sbjct: 304 SILKEENDPTKPLTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEENEFINHDGL 363
Query: 676 DKSXQLE 696
D S L+
Sbjct: 364 DSSLDLD 370
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = -1
Query: 316 RPLLA-----NEKVRWSSHLSKDLRLYPWDFQILSDYRSLFHLPCFKFRNL 179
RPLL N KV S L + YPW ++L + FHL F+ L
Sbjct: 476 RPLLGEMKDKNHKVLMPS-LDDPMLSYPWSKEVLGCLKHKFHLKGFRKNQL 525
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 376 NAVELSAGSAGDY-LENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKA 552
N+ E + + +Y + +++ + D+ +D +N+ +D+ S S S++
Sbjct: 187 NSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYER 246
Query: 553 VLDTDSRQSESQHATDSNIGEINENSGND 639
D D + E + + +EN ++
Sbjct: 247 DEDVDEEEEEDDDENNDEGDDEDENENDE 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,535
Number of Sequences: 5004
Number of extensions: 55033
Number of successful extensions: 238
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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