Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H06
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 32 0.39
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 32 0.52
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 30 1.6
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 29 3.6
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 4.8
02_02_0741 + 13590883-13591582,13591955-13592250 29 4.8
04_04_0339 - 24513699-24516827 28 6.4
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 6.4
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 8.4
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +1
Query: 409 DYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQ 588
D + + F+T+ + DNAV D L +D+ I+ + H ++QS S+
Sbjct: 196 DLISSGDDAFNTEEHHLEDNAVLRGGDDL-----DDDFIEEEETRHTKA--KKAKQSSSK 248
Query: 589 HATDSNIGEINENSGNDSNFAT 654
T++ G+ N N+ +N A+
Sbjct: 249 STTETGDGDKNTNTKAKANSAS 270
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 31.9 bits (69), Expect = 0.52
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +1
Query: 199 MEDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDE-SSTSNQCFL 375
++DE D+ K S +D+ + +N NG S L + +S +A+DE SN
Sbjct: 636 VKDEEVIDSSKNSGENLDSS----MQKNDNGESQQLGDAPADSSSSAIDEIKGNSNDRVG 691
Query: 376 NAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDN 519
N +E GS +Y E G ++ I ++ +D L T D+
Sbjct: 692 NGLE---GSHDEYNEVAGEDIHGEASLINESVDLKVSDCLEDRKTSDD 736
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 30.3 bits (65), Expect = 1.6
Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 3/169 (1%)
Frame = +1
Query: 196 NMEDETSSDNQKGSENPMDTDEGPLINENSNGLSH--LLTEGEFNSVDAAVDESSTSNQC 369
NM E SSD + + DE PL+ + L N+ + DE +++
Sbjct: 385 NMATEESSDTVSEEKEAVPADEVPLVTVTCGEATRDAELPTNIGNAKEEDDDEMEAAHEA 444
Query: 370 FLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHK 549
AVE+ D L + ++ + +A D D+ QS +
Sbjct: 445 GF-AVEVDGSETVDELIGTLTEHADNAIQLNFSAELSCADEEAGVFATDDLQQSSATVKT 503
Query: 550 AVLDTDSRQSESQHATDSNIG-EINENSGNDSNFATEHINLNVDKSXQL 693
V D+++ + E ++ +G + E + E ++ + D + QL
Sbjct: 504 MVADSEANEEEDALEAENEVGFAVEEKEVRTGDEPHETLSNDADGAIQL 552
>11_04_0160 +
14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 274 NENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPR 435
NE G+S + E + S+DA +D+ + + F AV + GSAG+ ++ R
Sbjct: 300 NETKLGMSRGVPEPKLTSMDAMIDKLTGAIFLFQIAVVVVLGSAGNVWKDTEAR 353
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 481 PNDSLNSALTEDNSIQSDS--ASHKAVLDTDSRQSESQHATDSNIGEINENSGNDS 642
P+D + + L S + D+ + K V+D DS E DSN+ + G S
Sbjct: 156 PDDVVATGLKSSRSFRKDAPHVTEKRVMDNDSSTPEKDTTADSNLPVKSNEFGESS 211
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +1
Query: 196 NMEDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAA-VDESSTSNQCF 372
N S+D + G+ P +I + NG + ++ EF DAA + + F
Sbjct: 126 NQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIIAGSEFTPEDAARIPKRQRGRNTF 185
Query: 373 LNAVELSA-----GSAGDYLENNGPRFSTDSFDIGDN 468
A +L+ G + +G RFS D D D+
Sbjct: 186 RGARQLTRHLIKYGPPRPKDDESGERFSADDDDDNDD 222
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 514 LQSMRYLE-NHWEKLQHYHQCQKNLY*SEGRCFRGSHQRFQLIIPRRSRNI 365
+Q+++ L+ +H EKL H H+ NL + G H + I+PR +N+
Sbjct: 630 MQALQVLDLSHCEKLLHLHESVSNLVNLQILNLEGCH--YLAILPRSMKNL 678
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 430 PRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHAT 597
PR + + D T P ++ A D S S +A D SRQ ++ H T
Sbjct: 1774 PRPNAEKLDDRSGDGTVPQRGVHLAFQGDGDYDSQFKSEQAFADPASRQQDTVHRT 1829
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 202 EDETSSDNQKGSENPMDTDEGPLINENSN-GLSHLLTEGEFNSVDAAVDESSTSNQ 366
E+ET DN+K E M TDE E + L E E + ++E N+
Sbjct: 227 EEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEKENE 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,290
Number of Sequences: 37544
Number of extensions: 304698
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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