Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H04
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    25   7.0  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   9.3  

>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 552 AIRYVXTPYSPKYLLSAQTTNMPSTLRTCALNY 454
           A++Y   P      L    +N+P+T++ C + +
Sbjct: 9   AVKYTNKPKEEDIKLPNSASNLPTTVQACVIQF 41


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 148 VMRTNKANIGEXTLHTXPDAREXRAQRTAXSAV 50
           V  T + N    TLH+ P   E  + RT  SAV
Sbjct: 114 VFHTKETNSKSSTLHSNPYCPEHHSIRTLPSAV 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,647
Number of Sequences: 5004
Number of extensions: 52212
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)