Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H04
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0761 - 36072849-36072895,36072987-36073043,36073280-360733...    28   5.5  
02_05_1352 - 35859019-35859109,35859307-35859350,35859402-358594...    28   7.2  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    27   9.6  
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336...    27   9.6  

>03_06_0761 -
           36072849-36072895,36072987-36073043,36073280-36073364,
           36073911-36073992,36074050-36074123,36074207-36074299,
           36074358-36074412,36074583-36074656,36076319-36076441
          Length = 229

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 438 YVSCLRLAMDVLRVAAIYYFLNVSYQYLYKVTKRP----KRKRWW 316
           Y+  L +     RV  + ++  V Y  +Y   + P    KRKRWW
Sbjct: 183 YIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRWW 227


>02_05_1352 -
           35859019-35859109,35859307-35859350,35859402-35859494,
           35859640-35859858,35860990-35861121,35861265-35861345,
           35861637-35861726,35863290-35863416,35864604-35864665
          Length = 312

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 221 IRVLLSVSKNRQVDGYAYLLFVLMCYAY 138
           I+ LL+VS   Q+  +AYL FV +C+++
Sbjct: 255 IKRLLAVSDPAQMKNHAYLHFVELCHSF 282


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 205 LKRTRIRRICASTAHSSVCHSLACGGRVSTCLMTCNHPPAFSFRSFS 345
           +KR+   R  A T H + CH         TC ++C      S   FS
Sbjct: 157 IKRSEHHRPKAGTPHCTSCHCWLHNAPSLTCSLSCKKKAGISSDDFS 203


>08_02_0684 +
           20031661-20031957,20032094-20032512,20033600-20033606,
           20033905-20033982,20034086-20034121
          Length = 278

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 477 VWMACLL--FARLTNILANTAXSHNEWRIAQCGSSIRIPSVMTSILLIKSMLLA 632
           +W+AC L   + + + LA  A   + W  A+C ++I + +    +LLI + + A
Sbjct: 30  LWLACALRIASAVNHCLAVKAAGVSVWADARCDATIELAAPADVVLLILNAVAA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,508
Number of Sequences: 37544
Number of extensions: 336909
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)