Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H04
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   3.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   6.5  
AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 265  NDT-PNCGQSMRIFALFVSF*VCQKTDKSTDTRICYSSLCV 146
            NDT  +CGQ  R          C  T  +TDT +C SS+C+
Sbjct: 1117 NDTCGSCGQETRKRKCLSLQYGCACTGNATDTSVCASSVCL 1157


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 8   PMPVXHSSFLLPAPHCAXRC-SLCALFARIRRSVERLF 118
           P PV +   + PA  C  RC S C   AR R    +LF
Sbjct: 92  PAPVFNQYAMQPANDCCCRCGSPCRFMARHRTHGSKLF 129


>AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical
           protein F52H2.7 protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 225 ANMRIDCPQFGVS 263
           ANMRI CPQF VS
Sbjct: 845 ANMRISCPQFNVS 857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,724
Number of Sequences: 27780
Number of extensions: 309369
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)