Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H03
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 2.2
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 2.2
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 27 3.0
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 27 3.0
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 5.2
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 6.9
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 6.9
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 6.9
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 2.2
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 107 EILTWKPKYNFYEQSSENIWNRSLEVIKDVVSGTD-AANIKGIGFDATCSLVALDKNFNA 283
+++TW P + S ++ S+ +D G D A + G T +A N N
Sbjct: 427 KVVTWHPTEDLLVSGS---YDNSICFWRD--DGDDWALTCQLQGHTNTVWALAFSPNGNT 481
Query: 284 IAVSDSNNNDQNVIMWMDHRAYNEANAINKTN 379
+A +D ND NV +W+ + + I+ TN
Sbjct: 482 LASAD---NDGNVFLWIKISSNEDVATIDSTN 510
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -1
Query: 700 TIFSRHQHFVANLEIIVISQVI*PNLM 620
T+ SR QH++AN+E +++++ I +L+
Sbjct: 340 TLSSRRQHYLANVEQLMLAEAIRQSLL 366
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 264 KATNEHVASKPMPLILAASVPLTTSLITSSERFQIFSEDCS*KLYL 127
K N H SKP P ++S LI + ++F + S YL
Sbjct: 100 KFVNRHTGSKPQPNFYSSSESSEKELIWFQPKMRVFLQSLSNMSYL 145
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 38 VGSSSVRAALVDNR---GHVHKTSV--REILTWKPKYNFYEQSSENI 163
VG S+R ++ +H+T + RE L + PKYN YE+ +N+
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNL 104
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 38 VGSSSVRAALVDNR---GHVHKTSV--REILTWKPKYNFYEQSSENI 163
VG S+R ++ +H+T + RE L + PKYN YE+ +N+
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNL 104
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 341 RAYNEANAINKTNHTVLKYVGGKVSLEMQMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWK 520
R + AN T + G K L +WL L++ +S Y +F PD L K
Sbjct: 223 RTHPNANVYALTTPLLTSSSGQK--LGKSAGNAIWLDPKLTDSYSLYQYFISAPDDLACK 280
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 74 NRGHVHK--TSVREILTWKPKYNFYEQSSENIWN 169
N GHV+ TS + +T + N Y+++S+ WN
Sbjct: 617 NAGHVNSMLTSKAKTVTRRGNANIYKKASDRPWN 650
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 623 EIGLNDLADDNYFKIGNK 676
E+GLND+ +NY K G K
Sbjct: 441 ELGLNDMKTENYEKDGGK 458
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 228 PLILAASVPLTTSLITSSERFQIFSEDCS 142
P +L+ +V + L+ S Q +SE+CS
Sbjct: 586 PKLLSTAVSMFEDLVRYSSHLQYYSEECS 614
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 407 KVSLEMQMPKLLWLKNNLSEKWS 475
++SL Q +++LKN +S WS
Sbjct: 46 EISLPTQQAAVIYLKNRVSRSWS 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,575
Number of Sequences: 5004
Number of extensions: 61947
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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