Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H03
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical ... 29 2.8
Z82096-3|CAD45613.1| 548|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.4
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 28 8.5
U42832-6|AAP40542.2| 342|Caenorhabditis elegans Hypothetical pr... 28 8.5
U42832-5|ABA03119.1| 468|Caenorhabditis elegans Hypothetical pr... 28 8.5
U42832-4|AAA83574.4| 462|Caenorhabditis elegans Hypothetical pr... 28 8.5
>Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 EKW-SQYGHFFDLPDFLTWKATGSMSRSLCSLVCKWN 571
EKW SQ+ P TWK + S +RSL +C W+
Sbjct: 218 EKWQSQFRELIQKP---TWKCSYSETRSLFRTICGWS 251
>Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 EKW-SQYGHFFDLPDFLTWKATGSMSRSLCSLVCKWN 571
EKW SQ+ P TWK + S +RSL +C W+
Sbjct: 218 EKWQSQFRELIQKP---TWKCSYSETRSLFRTICGWS 251
>AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical
protein K10B4.3 protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/70 (21%), Positives = 36/70 (51%)
Frame = +2
Query: 131 YNFYEQSSENIWNRSLEVIKDVVSGTDAANIKGIGFDATCSLVALDKNFNAIAVSDSNNN 310
Y+ EQS+E++ +++ +V ++++ + + + T L LD+N +++A+ NN
Sbjct: 385 YDIKEQSTESLLSKNSKVFGNLIT-SGGRTVFEVCDSPTVELCELDRNTHSLAMQYQNNR 443
Query: 311 DQNVIMWMDH 340
+ H
Sbjct: 444 SSGSLSRRSH 453
>Z82096-3|CAD45613.1| 548|Caenorhabditis elegans Hypothetical
protein ZK909.2c protein.
Length = 548
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +2
Query: 365 INKTNHTVLKYVGGKVSLEMQMP----KLLWLKNNLSEKWSQYGHFFD---LPDFLTWKA 523
++ +H ++ G V +E Q+P ++ WLK LS+ WS F + L DF K
Sbjct: 222 VSPIDHRQVRRGGRGVVVESQVPNFTAEIFWLKTQLSDHWSMKWLFQNTACLDDFDRIKT 281
Query: 524 TGSMSRSLCSLV 559
G+ S LV
Sbjct: 282 LGTGSFGRVMLV 293
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 101 VREILTWKPKYNFYEQSSENIWNRSLEVIKDVVSGT-DAAN 220
+ EI T YNF+ + +N+W+ V+KD + DA N
Sbjct: 234 ISEIETLTGCYNFFIDNEDNLWSGCHPVLKDALGHLGDATN 274
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical
protein T21H8.1b protein.
Length = 962
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 498 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTY 394
R + PY H+SD F S + G S L PP Y
Sbjct: 63 RRQALPYVTHYSDSGFGSAPSAGSSCSYLPPPPPY 97
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 498 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTY 394
R + PY H+SD F S + G S L PP Y
Sbjct: 63 RRQALPYVTHYSDSGFGSAPSAGSSCSYLPPPPPY 97
>U42832-6|AAP40542.2| 342|Caenorhabditis elegans Hypothetical
protein F01E11.5b protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 425 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 532
Q P L++ KNN + + F DLP + + ATGS
Sbjct: 36 QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 67
>U42832-5|ABA03119.1| 468|Caenorhabditis elegans Hypothetical
protein F01E11.5c protein.
Length = 468
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 425 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 532
Q P L++ KNN + + F DLP + + ATGS
Sbjct: 162 QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 193
>U42832-4|AAA83574.4| 462|Caenorhabditis elegans Hypothetical
protein F01E11.5a protein.
Length = 462
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 425 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 532
Q P L++ KNN + + F DLP + + ATGS
Sbjct: 162 QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,354
Number of Sequences: 27780
Number of extensions: 342061
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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