Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H03
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.34 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.34 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 467 KWSQYGHFFDLPDFLTWKATGSMSRSLCSLVCKWN---YECSARNKQG 601
           KW +     +LPD L  K     +  + S+  K +   Y CSARNKQG
Sbjct: 551 KWERANR--ELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSARNKQG 596


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 467 KWSQYGHFFDLPDFLTWKATGSMSRSLCSLVCKWN---YECSARNKQG 601
           KW +     +LPD L  K     +  + S+  K +   Y CSARNKQG
Sbjct: 551 KWERANR--ELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSARNKQG 596


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 368 NKTNHTVLKYVGGKVSLEMQMPKLLWLKNN 457
           N   H +L YVG + S+  ++  L W  +N
Sbjct: 788 NIITHMILNYVGSEDSVIPRILYLTWYSSN 817


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 77   RGHVHKTSVREILTWKPKYNFYEQSSENIWNR 172
            RG V + S+R   TW P+ + YE+ +    NR
Sbjct: 1669 RGTVIR-SIRSHSTWDPRRHMYEELNHCAPNR 1699


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 112 NFSHRSFMYMSSVIHKCSTNAA*THXDSNLAPFXLSI 2
           NF   +F  M++ +++   N    + D++  PF +SI
Sbjct: 394 NFDDVNFRIMNANVNELILNTRCENPDNDRTPFKISI 430


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 112 NFSHRSFMYMSSVIHKCSTNAA*THXDSNLAPFXLSI 2
           NF   +F  M++ +++   N    + D++  PF +SI
Sbjct: 394 NFDDVNFRIMNANVNELILNTRCENPDNDRTPFKISI 430


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 112 NFSHRSFMYMSSVIHKCSTNAA*THXDSNLAPFXLSI 2
           NF   +F  M++ +++   N    + D++  PF +SI
Sbjct: 394 NFDDVNFRIMNANVNELILNTRCENPDNDRTPFKISI 430


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 498 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTYLRT 385
           +++K P  ++F++  F   +    CI  L F P Y  T
Sbjct: 694 KTRKIP--ENFNESKFIGFTMYTTCIIWLAFVPIYFGT 729


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 498 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTYLRT 385
           +++K P  ++F++  F   +    CI  L F P Y  T
Sbjct: 784 KTRKIP--ENFNESKFIGFTMYTTCIIWLAFVPIYFGT 819


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,792
Number of Sequences: 438
Number of extensions: 4026
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)