Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H02
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    33   0.058
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.72 
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   6.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   6.7  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   8.9  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +1

Query: 622 DRRRRNNEAAKRSREKRRFNDMVLEQRVVELSKENHVLKAQLXAIK 759
           D+RRRN  A+ R R K++  +  LE+   EL+++  +L+ ++  ++
Sbjct: 269 DKRRRNTAASARFRIKKKLKEQQLERTAKELTEKVAILETRVRELE 314


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 493 PPSNGSSGD----SHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRR 630
           PP N   G      H +  F+  R DF+  ++  E++   +   G+W  R
Sbjct: 315 PPLNRIDGQIYNLCHFWSNFEIARLDFYNSKEYNEYVDALENAGGFWTER 364


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = +1

Query: 469 PHFP--MDQAPPSN---GSSGDSHDYGA-FDFKRKDFFGQRKQREFIPDSKKDDGYWDRR 630
           P FP  + Q PP +   G++ +   +GA F       FG      F P +   +  + +R
Sbjct: 55  PTFPEQIPQLPPFDRFPGTNANFFPFGAPFMLPPALMFGPNTV-PFFPQTASSNKTFSKR 113

Query: 631 RRNNEAAKRSREKRRFNDMVLEQRVVELSKENHVLK 738
           +R++E +  +R K + ++        +  KEN  LK
Sbjct: 114 KRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALK 149


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 481 MDQAPPSNGSSGDSHDYGAF-DFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKR 657
           MD   PS  S+  ++   A     +K  FG +K  + I DS  ++    + R  + A  +
Sbjct: 141 MDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVENKEETKDRNLDRALSK 200

Query: 658 SREKRRFNDMVLEQRVVELSKENHVL 735
             + R  N+  L  +   L  +  +L
Sbjct: 201 FTQSREKNEQNLSSKASVLRNKKSIL 226


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +1

Query: 565 GQRKQREFIPDSKKDDGYWDRR-----RRNNEAAKRSREKRRFNDMVLEQRVVELSKENH 729
           G ++    +P  +K+ G   +R     R   E  +  REK     +V +  + EL++EN 
Sbjct: 107 GIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHTIQELARENA 166

Query: 730 VLKAQ 744
            LK++
Sbjct: 167 RLKSE 171


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 283  LRTPLLELSKWRSNCQKSTKKNKNHNRSTVKITVSKFKNVK 161
            +RTP+   +K  +N   + K+ K H+  + K +  + KN K
Sbjct: 1108 IRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEK 1148


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 735 EDVVFLREFDDALFQD 688
           E++ F+R+FD +LF+D
Sbjct: 324 EEIFFMRKFDSSLFKD 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,540
Number of Sequences: 5004
Number of extensions: 54155
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)