Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G23
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 35 0.070
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 31 1.1
04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877... 31 1.1
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 3.5
07_03_0283 + 16241231-16241625,16241774-16241783 29 4.6
02_05_0817 + 31994241-31995908 28 6.0
11_06_0416 + 23307984-23308281,23310083-23310900 28 8.0
06_03_0585 - 22528082-22530100 28 8.0
06_03_0580 + 22489184-22491202 28 8.0
06_03_0502 + 21493442-21494341 28 8.0
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 8.0
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 34.7 bits (76), Expect = 0.070
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = -1
Query: 401 SPCAGDPKVAFGEALVLAFVRSFGLAEHKRA-------SVDSGERVLTDAKMHAVFSPRV 243
S C+ D K AF A+ + + S LAE + + D G+R+L + + P +
Sbjct: 226 SSCSDDTKTAFA-AVTVPLLYSSSLAEPRSIPSKSMYPTFDVGDRILAEKVSYIFREPEI 284
Query: 242 FDTTVVSLCGALQPRGLSLSEQYLGRCLLENGNLV 138
D + ALQ G S + ++ R + + G+ V
Sbjct: 285 LDIVIFRAPPALQDWGYSSGDVFIKRVVAKAGDYV 319
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 389 GDPKVAFGEALVLAFVRSFGLA-EHKRASVDSGERVLTDAKMHAVFSPR 246
GD +AF A A F LA E + ++ G+ L D ++HAVF PR
Sbjct: 85 GDLGIAFTLAKRYAAREQFDLAAEECQRALGRGDADLVDPQLHAVFEPR 133
>04_04_1569 -
34486005-34486303,34486386-34486928,34487382-34487766,
34488450-34488650,34488739-34488951,34489210-34489446
Length = 625
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 277 TLKCMPSFRHEYSTPLSSPSVAHSSLVACPSLNN 176
T+ CM SF Y++ + P+V H +LV P N+
Sbjct: 442 TVGCMESFDKYYNSKNADPNVLHGALVGGPDAND 475
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 154 SRRHRPRYCSERDRPRGWSAP--QRETTVVSNTRGEKTACILASVKTRSPLSTLALLCSA 327
S+R + E +P+ AP Q+ T + T ++A I A + S A +
Sbjct: 201 SQRSSQQPSQEPQQPKQQQAPVQQQPTQKQAPTVLRRSASIAARQAAMAQQSQDAKTVPS 260
Query: 328 KPKLRTKASTSASPKAT 378
PK++ +AST A+P A+
Sbjct: 261 SPKIKRQASTKAAPVAS 277
>07_03_0283 + 16241231-16241625,16241774-16241783
Length = 134
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -2
Query: 220 SVAHSSLVACPSLNNTSAGASLRTGTLSPELTGC 119
+VA ++VAC + ++S+ + L GT++ L+GC
Sbjct: 11 AVAAMAVVACFAATSSSSSSQLHCGTVTSLLSGC 44
>02_05_0817 + 31994241-31995908
Length = 555
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -2
Query: 235 PLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCPVV*ITHVPKTNNVQE 71
PLSS + AHS+ + P LN TS R L P L + THV N+Q+
Sbjct: 21 PLSSLAAAHSANRSSPRLNPTSVPPPPRQLHL-PTLQARRLCSTTHVVLPTNLQD 74
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = +3
Query: 219 EGDDSGVEYSWRKDGMHF-SVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFGVAST 395
+GDD G + W +H D + S A+ +G + +SD +
Sbjct: 73 DGDDDGADAGWISIALHLDDPNVDGVRNGVRARFKISLLAAAHDGSHPPPPRSD----QS 128
Query: 396 RATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 497
AT+ +I A EE V G F LRC V
Sbjct: 129 TATRSFPRFITAKALEESGYLV--GDSFSLRCDV 160
>06_03_0585 - 22528082-22530100
Length = 672
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 208 SAPQRETTVVSNTRGEKTACILASVKTRSP-LSTLALLCSAKPKLRTKASTSASPKATLG 384
+A R+ + ++T G A +L + T SP L T L SA+ + + + ++ P AT G
Sbjct: 38 AAAARDPSAGNDTFGALPAALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASFPPAT-G 96
Query: 385 SPAQGLLSSAV 417
+ ++SAV
Sbjct: 97 RLLESFVNSAV 107
>06_03_0580 + 22489184-22491202
Length = 672
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 208 SAPQRETTVVSNTRGEKTACILASVKTRSP-LSTLALLCSAKPKLRTKASTSASPKATLG 384
+A R+ + ++T G A +L + T SP L T L SA+ + + + ++ P AT G
Sbjct: 38 AAAARDPSAGNDTFGALPAALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASFPPAT-G 96
Query: 385 SPAQGLLSSAV 417
+ ++SAV
Sbjct: 97 RLLESFVNSAV 107
>06_03_0502 + 21493442-21494341
Length = 299
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +3
Query: 405 KLRRTYIETPAFE----EKKVTVVEGKPFELRCPVPGGYPKPTISWMRHHDEDGSXENFM 572
+LR++ + AF EKK E + + P +P W+R DED E F
Sbjct: 172 RLRKSASDQSAFAHFEAEKKAAAAEVEREAVEARRPATTREPPRVWLRVADEDPEPEEFD 231
Query: 573 DRXATYSPE 599
D PE
Sbjct: 232 DEADDDEPE 240
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 241 STPLSSPSVAHSSLVACPSLNNTSAGA--SLRTGTLSPELTGCPVV 110
+T LS PS+ L+A PSLN S + +L + ++ CPV+
Sbjct: 1021 ATELSIPSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVL 1066
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,465,971
Number of Sequences: 37544
Number of extensions: 472971
Number of successful extensions: 1638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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