Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G21
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          27   0.22 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          27   0.22 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          27   0.22 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          27   0.22 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    27   0.22 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.29 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          26   0.38 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          26   0.38 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.7  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   6.2  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 278 YKPTPTLSCSHSQFIFSLYNTNSVIKTFC 192
           Y+  PTLS S+S ++ S+Y + +   T C
Sbjct: 366 YRQPPTLSESYSSYVNSMYASGAQFATPC 394


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+  S     NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSY 245


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 364 DQKTISKMAAVAANRLLSESAIFQRSLDPTNRHRHSAVRTHNSY 233
           + KT  K A +++N L S S  FQR+    +R+        NSY
Sbjct: 203 ETKTCKKYA-ISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSY 245


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 843 GCPSXWIW 820
           GCP+ W+W
Sbjct: 382 GCPADWLW 389


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 226 SENMNCECEQLSVGVGL*GQVNVEIWQIPRE 318
           S+N+   CE   + + L G +N +++Q P E
Sbjct: 50  SDNVFANCELQKLRLLLQGNINNQLFQTPCE 80


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 9   ACTRTASRTSRAPLSTNHQISHGFLFHANIR 101
           AC+ T    S++P  T+    +G   +AN++
Sbjct: 588 ACSTTGGVPSKSPTLTHSPTMYGDALNANLQ 618


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 24   ASRTSRAPLSTNHQISHGFLFH 89
            A+  S A L  N+ + H F++H
Sbjct: 1722 AAEASAAGLHPNNTLLHSFMYH 1743


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 24   ASRTSRAPLSTNHQISHGFLFH 89
            A+  S A L  N+ + H F++H
Sbjct: 1718 AAEASAAGLHPNNTLLHSFMYH 1739


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 585 KKYSRWIGG 611
           KKYS WIGG
Sbjct: 110 KKYSVWIGG 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,253
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)