Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G20
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1076 + 34359922-34360452                                         40   0.001
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    31   0.94 
06_02_0195 + 12895579-12895968                                         29   2.2  
04_02_0009 + 8476600-8477125,8478711-8478730                           29   2.2  
06_02_0233 + 13315579-13316046                                         29   2.9  
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276     29   2.9  
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905...    29   3.8  
01_06_1614 - 38648495-38649706                                         28   5.0  
09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921     27   8.7  
03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262           27   8.7  

>01_06_1076 + 34359922-34360452
          Length = 176

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -3

Query: 335 GGGGSQTKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQ-EPHRERRVQR 159
           GGGG +    P    RG  R    R   R + PGRQQ++A    GRRL+ E  R R +  
Sbjct: 61  GGGGDELSAQPRRRPRGGSR----RWSSRGRQPGRQQKAAPRRPGRRLKAEGVRCRPMVA 116

Query: 158 CTKQELPEAIRGP 120
           C+K++   + R P
Sbjct: 117 CSKRQSARSARSP 129


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -3

Query: 335 GGGGSQTKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC 156
           GGGG   K     ERR  +R  E  E  R +   +++E    ER  R +E  R+R  +  
Sbjct: 474 GGGGKGEKEREEEERR--QREKEEEERRRQEEERKRREEEEKERREREEEERRQREKEEK 531

Query: 155 TKQELPEAIR 126
            ++E  E  R
Sbjct: 532 KRREEEEQRR 541


>06_02_0195 + 12895579-12895968
          Length = 129

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 338 CGGGGSQTKLLP-GSERRGQRRPHECREG-HR*QHPGRQQESAGLERGRRLQEPHR 177
           CG  G+Q   LP G + + +      R   H     GR+QE+A   R R +  PHR
Sbjct: 43  CGRPGAQAATLPLGEQSQSEAATAAARFSLHSLDAGGRKQEAADDARRRAVMPPHR 98


>04_02_0009 + 8476600-8477125,8478711-8478730
          Length = 181

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 233 RQQESAGLERGRRLQEPHRERRVQRCT 153
           R++  A + RGRRL+   R R  +RCT
Sbjct: 126 RRRSPAAVARGRRLRRQQRRRPTRRCT 152


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 344 TACGGGGSQTKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERG-RRLQEPHRERR 168
           TA  GGG   +L      R QRRP   RE  R +   R++ S   E G  R   P  E R
Sbjct: 71  TAVFGGGVGGRLSAERRSRWQRRPAR-RERRRWRPAWRERRSRWREVGLAREARPVEEAR 129

Query: 167 VQRCTKQELPEAIRG 123
           + R  +  + EA  G
Sbjct: 130 LAREARPAVEEATFG 144


>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
          Length = 924

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 218 HSPAVVLDAVNGVPLDTHEVVAARAAHFQAKALSGY 325
           +S AV L  +NG PLD H V+  R A     A+S Y
Sbjct: 752 YSAAVALTHMNGYPLDGH-VLEVRIAGVHPDAMSSY 786


>09_02_0420 +
           9051728-9051754,9053244-9053530,9055263-9055500,
           9057010-9057204,9058075-9058339,9058520-9058827
          Length = 439

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 344 TACGGGGSQTKLLPGSERRGQRRPHECREGHR*Q-HPGRQQESAGLERGRRLQEPHRER 171
           TA G G +QT      ERR +RR  E R   R   HP  +Q       G R ++ HR R
Sbjct: 287 TASGDGAAQTAEATRLERRRRRRWVEWRRRRRATGHPKGRQPPGSSGSGARARQ-HRRR 344


>01_06_1614 - 38648495-38649706
          Length = 403

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -3

Query: 335 GGGGSQTKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC 156
           G GG      PG   +G+ R H+   GH   H  R++++A   +G     P      + C
Sbjct: 240 GQGGPYRCSYPGC--KGEYRTHQGLGGHVAGHINREKQAAAAAQGGSGARPEGNHPCKTC 297

Query: 155 TKQELPEAIRGPH 117
            K+       G H
Sbjct: 298 GKEFSTGVALGGH 310


>09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921
          Length = 264

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -3

Query: 341 ACGGGGSQTKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQ 162
           ACGGGG + + L   + R   R  E       +   R     GL+  R++    + RR +
Sbjct: 31  ACGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQ-PRQVAVWFQNRRAR 89

Query: 161 RCTKQ 147
             TKQ
Sbjct: 90  WKTKQ 94


>03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262
          Length = 152

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = -3

Query: 335 GGGGSQTKLLP--GSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQ 162
           GGGG+   +    G  RRG+ +      G   +  G    +A +  G    +P   RR  
Sbjct: 52  GGGGAMMAVAAAGGQPRRGRTKEEPAAAGAEEEKGGEDAAAAAVAIGMPSSKPEMTRRAL 111

Query: 161 RCTKQELPEA 132
           R  +    EA
Sbjct: 112 RAEEAAAAEA 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,644,679
Number of Sequences: 37544
Number of extensions: 240948
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)