Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G20
         (607 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC098419-1|AAH98419.1|  668|Homo sapiens TBC1D10B protein protein.     30   5.5  
BC093816-1|AAH93816.1|  533|Homo sapiens TBC1 domain family, mem...    30   5.5  
BC093814-1|AAH93814.1|  533|Homo sapiens TBC1 domain family, mem...    30   5.5  
BC072453-1|AAH72453.2|  533|Homo sapiens TBC1 domain family, mem...    30   5.5  
BC050523-1|AAH50523.2|  385|Homo sapiens TBC1D10B protein protein.     30   5.5  
AL117408-1|CAB55908.1|  233|Homo sapiens hypothetical protein pr...    30   5.5  
AK023192-1|BAB14454.1|  533|Homo sapiens protein ( Homo sapiens ...    30   5.5  
AK002101-1|BAA92086.1|  289|Homo sapiens protein ( Homo sapiens ...    30   5.5  
U52191-1|AAC50806.1| 1539|Homo sapiens SMCY protein.                   30   7.3  
D87072-1|BAA13241.2| 1512|Homo sapiens KIAA0234 protein.               30   7.3  
BC146767-1|AAI46768.1| 1482|Homo sapiens JARID1D protein protein.      30   7.3  
BC132721-1|AAI32722.1| 1539|Homo sapiens jumonji, AT rich intera...    30   7.3  
AF273841-1|AAG00951.1| 1539|Homo sapiens SMCY protein.                 30   7.3  
AF154915-2|AAF79045.1|  338|Homo sapiens transcription factor HO...    30   7.3  
AF134849-1|AAK27839.1|  139|Homo sapiens SMCY protein.                 30   7.3  
BC098576-1|AAH98576.1|  918|Homo sapiens inner centromere protei...    29   9.6  
AY714053-1|AAU04398.1|  918|Homo sapiens inner centromere protei...    29   9.6  
AF282265-1|AAF87584.1|  919|Homo sapiens inner centromere protei...    29   9.6  

>BC098419-1|AAH98419.1|  668|Homo sapiens TBC1D10B protein protein.
          Length = 668

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 570 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 629

Query: 149 QE 144
           QE
Sbjct: 630 QE 631


>BC093816-1|AAH93816.1|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 435 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 494

Query: 149 QE 144
           QE
Sbjct: 495 QE 496


>BC093814-1|AAH93814.1|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 435 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 494

Query: 149 QE 144
           QE
Sbjct: 495 QE 496


>BC072453-1|AAH72453.2|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 435 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 494

Query: 149 QE 144
           QE
Sbjct: 495 QE 496


>BC050523-1|AAH50523.2|  385|Homo sapiens TBC1D10B protein protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 287 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 346

Query: 149 QE 144
           QE
Sbjct: 347 QE 348


>AL117408-1|CAB55908.1|  233|Homo sapiens hypothetical protein
           protein.
          Length = 233

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 135 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 194

Query: 149 QE 144
           QE
Sbjct: 195 QE 196


>AK023192-1|BAB14454.1|  533|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13130 fis, clone NT2RP3002972, weakly similar to
           Halocynthia roretzi mRNA for HrPET-1. ).
          Length = 533

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 435 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 494

Query: 149 QE 144
           QE
Sbjct: 495 QE 496


>AK002101-1|BAA92086.1|  289|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11239 fis, clone PLACE1008533. ).
          Length = 289

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GSQTKLLPGSERRGQRRPHECREGHR*-QHPGRQQESAGLERGRRLQEPHRERRVQRCTK 150
           G+ T L    E R Q +  + +E  R  Q   R++E    E+ R  QE  RE++ +   K
Sbjct: 191 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 250

Query: 149 QE 144
           QE
Sbjct: 251 QE 252


>U52191-1|AAC50806.1| 1539|Homo sapiens SMCY protein.
          Length = 1539

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245  QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
            +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 1428 EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 1462


>D87072-1|BAA13241.2| 1512|Homo sapiens KIAA0234 protein.
          Length = 1512

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245  QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
            +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 1401 EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 1435


>BC146767-1|AAI46768.1| 1482|Homo sapiens JARID1D protein protein.
          Length = 1482

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245  QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
            +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 1371 EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 1405


>BC132721-1|AAI32722.1| 1539|Homo sapiens jumonji, AT rich interactive
            domain 1D protein.
          Length = 1539

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245  QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
            +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 1428 EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 1462


>AF273841-1|AAG00951.1| 1539|Homo sapiens SMCY protein.
          Length = 1539

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245  QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
            +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 1428 EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 1462


>AF154915-2|AAF79045.1|  338|Homo sapiens transcription factor
           HOXD11 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -3

Query: 341 ACGGGGSQ-TKLLPGSERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRV 165
           A GGGGS  TK  PGSE +G        EG      G   E AG E+      P R R+ 
Sbjct: 217 AGGGGGSPCTKATPGSEPKG------AAEGSGGDGEGPPGE-AGAEKSSSAVAPQRSRK- 268

Query: 164 QRC--TKQELPEAIR 126
           +RC  TK ++ E  R
Sbjct: 269 KRCPYTKYQIRELER 283


>AF134849-1|AAK27839.1|  139|Homo sapiens SMCY protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 245 QHPGRQQESAGLERGRRLQEPHRERRVQRCTKQEL 141
           +H G +  S  LER RR Q+  + R V+   +QEL
Sbjct: 89  EHQGSRTRSRALERRRRRQKVDQGRNVENLVQQEL 123


>BC098576-1|AAH98576.1|  918|Homo sapiens inner centromere protein
           antigens 135/155kDa protein.
          Length = 918

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 296 ERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC-TKQELPE 135
           +R  +RR  E RE  R +   R+QE    E+ R+L E  R R  +R   ++EL E
Sbjct: 687 QREQERREQERREQERREQERREQERR--EQERQLAEQERRREQERLQAERELQE 739


>AY714053-1|AAU04398.1|  918|Homo sapiens inner centromere protein
           protein.
          Length = 918

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 296 ERRGQRRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC-TKQELPE 135
           +R  +RR  E RE  R +   R+QE    E+ R+L E  R R  +R   ++EL E
Sbjct: 687 QREQERREQERREQERREQERREQERR--EQERQLAEQERRREQERLQAERELQE 739


>AF282265-1|AAF87584.1|  919|Homo sapiens inner centromere protein
           INCENP protein.
          Length = 919

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 296 ERRGQ-RRPHECREGHR*QHPGRQQESAGLERGRRLQEPHRERRVQRC-TKQELPE 135
           ERR Q RR  E RE  R +   R+QE    E+ R+L E  R R  +R   ++EL E
Sbjct: 687 ERREQERREQERREQERREQERREQERR--EQERQLAEQERRREQERLQAERELQE 740


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,023,590
Number of Sequences: 237096
Number of extensions: 1265187
Number of successful extensions: 3129
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3126
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)