Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G20
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 17  SIFAAAVAKPSLVAPLAXSAVVPGVSSLSQYSTSVVHGSPLV-APALYN 160
           +IF+  +  PS+++P   S  VP    LS Y  S    SPLV AP + N
Sbjct: 382 NIFSPLILNPSVLSPWIFSPAVPLPFILSPYLLSPYIFSPLVMAPFILN 430


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 44  PSLVAPLAXSAVVPGVSSLSQYSTSVVHGSPLVAPA 151
           PS +AP A SA  P  S L+  STS     P +AP+
Sbjct: 302 PSTIAPAAPSAPAPAPSQLNPTSTSPT--MPAIAPS 335


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 23  FAAAVAKPSLVAPLAXSAVVPGVSSLSQYSTSVVHGSPLVAPA 151
           +A A+  P+    LA  A  PG+++ +     VV  +P +APA
Sbjct: 53  YAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPA 95


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 186  FLQSPPSLKPRTLLLSSWMLLTVSLSTLMRSSLP 287
            FL  P  +K   +  S+W L   SL +++R+S+P
Sbjct: 1375 FLGEPLYMKYTCISASTWKLAATSLMSVLRTSIP 1408


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 186  FLQSPPSLKPRTLLLSSWMLLTVSLSTLMRSSLP 287
            FL  P  +K   +  S+W L   SL +++R+S+P
Sbjct: 1375 FLGEPLYMKYTCISASTWKLAATSLMSVLRTSIP 1408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,897
Number of Sequences: 27780
Number of extensions: 170605
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)