Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G19
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                 225   3e-59
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   6e-26
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         58   7e-09
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)        30   2.7  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         29   4.7  
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_55231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score =  225 bits (551), Expect = 3e-59
 Identities = 117/226 (51%), Positives = 156/226 (69%), Gaps = 14/226 (6%)
 Frame = +2

Query: 152 DNSVDPPAKKRKLNTGEAH--SNNSAMANNGAR-----VEDE-------IDESLYSRQLY 289
           D +  PPAK+++      H  +NNS   NN        V DE       IDE LYSRQLY
Sbjct: 6   DQTTSPPAKRQRTTENSDHRTTNNSLACNNHVNNSSQSVRDEGQAEKMDIDEGLYSRQLY 65

Query: 290 VLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSE 469
           VLGH+AM++MA S+VLISGL GLGVEIAKNV+LGGVKSVTLHD     ++DL+SQF+L++
Sbjct: 66  VLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGVKSVTLHDTGAVELSDLTSQFFLNK 125

Query: 470 TVIGQNKALTSCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVAAFTH 649
             +G+N+A  S  +++ELN YV  +  T  LTE+F+ KF+VVVLT +S  EQ  ++ F H
Sbjct: 126 KDVGKNRAEVSHPRIAELNTYVSMSVNTQKLTEEFINKFQVVVLTESSLEEQLWISDFCH 185

Query: 650 ANNIALVIADTRGLFSQVFCDFGPXFTVLDVNGENPXSXMIAXITQ 787
           +  I L+I+DT+GLF Q+FCDFG  FTV+D NGE P S MI+ +++
Sbjct: 186 SKGIKLIISDTKGLFGQIFCDFGESFTVVDTNGEQPVSNMISAVSK 231


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score =  115 bits (276), Expect = 6e-26
 Identities = 57/110 (51%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +2

Query: 254 EIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCT 433
           EID+SLYSRQ Y+LG  AM++MA + V +SG+GGLGVEIAKN+ L G+KS+TLHD +  +
Sbjct: 6   EIDDSLYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLHDTRAAS 65

Query: 434 VADLSSQFYLSETVI--GQNKALTSCEQLSELNHYVPTTAYTGPLTEDFL 577
           +ADL SQF+L E  +   +N+A+ S  +++ELN YV     T  L E+ L
Sbjct: 66  MADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHTQTDALDENNL 115


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
 Frame = +2

Query: 293 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSET 472
           LG     ++ +S +L+ G GG+G E+ KN++L G K++ L D     V++L+ QF   + 
Sbjct: 13  LGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQ 72

Query: 473 VIGQNKALTSCEQLSELNHYVPTTAYTGPLTE-----DFLRKFRVVVLTGASWAEQERVA 637
            +G++KA  + E     N      A    +T      D+ ++F VV+    + A +  V 
Sbjct: 73  HVGKSKAKVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVN 132

Query: 638 AFTHANNIALVIADTRGLFSQ 700
               A ++ LV + T G   Q
Sbjct: 133 RMCLAADVPLVESGTAGYLGQ 153


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
 Frame = +2

Query: 293 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSET 472
           LG     ++ +S +L+ G GG+G E+ KN++L G K++ L D     V++L+ QF   + 
Sbjct: 13  LGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQ 72

Query: 473 VIGQNKALTSCEQLSELNHYVPTTAYTGPLTE-----DFLRKFRVVVLTGASWAEQERVA 637
            +G++KA  + E     N      A    +T      D+ ++F VV+    + A +  V 
Sbjct: 73  HVGKSKAKVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVN 132

Query: 638 AFTHANNIALVIADTRGLFSQ 700
               A ++ LV   T G   Q
Sbjct: 133 RMCLAADVPLVEIGTAGYLGQ 153


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = +2

Query: 416 DDKNCTVADLSSQFYLSETVIGQNKALTSCEQLSELNHYVPTTAYTGPLT---EDFLRKF 586
           D+   T  D  SQF      +G+N+A  S  +   LN  V  +A    +T   + FL  F
Sbjct: 3   DNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLDDF 62

Query: 587 RVVVLTGASWAEQERVAAFTHANNIALVIADTRGLFSQVFCDFG 718
            VVV TG S      +     A NI    +D  G +  +F D G
Sbjct: 63  DVVVATGCSSDILANLDERCRAKNIKFFASDVFGFYGYMFADLG 106


>SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +2

Query: 434 VADLSSQFYLSETVIGQNKALTSCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGAS 613
           VAD  +Q       I  +K ++  + +SE NH+  T      LTE+ +    +++  GA+
Sbjct: 109 VADYYNQLTNRHKPILSDKKISRSQAISEENHFYAT---ANELTEELVDLAWLILGHGAN 165

Query: 614 WAEQERVAAFTHANNIALVIADTRGLFSQVFCDFGPXFTVLDVNGENP 757
                     T  +N  L   D R   +QV CD G     +D  G  P
Sbjct: 166 -VNVRDAENKTPLHNTILKSHDLR--MAQVLCDNGADINAVDRFGNTP 210


>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
          Length = 416

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 479 GQNKALTSCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLT 604
           GQN ALTSC  + ++N+   +T  T PL  +  R+    VLT
Sbjct: 356 GQNAALTSCNLIGQMNNISSSTQRT-PLKNNDNRRQSSCVLT 396


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 155 NSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQLYV--LGHDAMRRMASS 328
           NS D P ++  LN  EAHS  S     GA+ + +  +S  ++Q +         +    S
Sbjct: 498 NSNDTPTEQ-PLNMKEAHSKKSTATKKGAKSKSKATKSKRAKQTFTNKRSKSVSKEKEPS 556

Query: 329 DVLISGLGGL---GVEIAKNVILGGVKSV 406
                GL GL    +EI  N+ L G  +V
Sbjct: 557 VDQEDGLEGLRKEAMEIDHNINLDGKVTV 585


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 125  CPMSSAEVADNSVDPPAKKRKLN 193
            CP+S ++V+D  VD P K+RK++
Sbjct: 1083 CPLSPSDVSDVYVDCPNKRRKIS 1105


>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 164 DPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRR 316
           D P  K   NT +        ANN  ++ DE+D+ L+S + + +  DA R+
Sbjct: 240 DKPLGKNTTNTRQX----XXXANNWTKLVDEMDDYLHSSRKFTMLSDASRK 286


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 CARSCPMSSAEVADNSVDPPAKKRKLNT 196
           C+ S   SS E  + S +PP+KKR + T
Sbjct: 451 CSESTAASSGEKVEGSTEPPSKKRVVPT 478


>SB_55231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 500 SCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVAAFTHANNIALV 670
           +C+Q+S+L HYV T    GP +   L  F +     A      R    ++A    LV
Sbjct: 11  ACDQISDLVHYVHTQLEPGPSSSSVLPLFLMAPFKSAIVGLARRPLVNSYARTPPLV 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,147,724
Number of Sequences: 59808
Number of extensions: 545921
Number of successful extensions: 1502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)