Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G18
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 31 0.85
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 29 2.6
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 29 3.4
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 29 4.5
01_07_0154 - 41532220-41533252,41533786-41533971,41534759-415350... 28 6.0
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 28 7.9
10_06_0174 - 11485684-11485962 28 7.9
09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923... 28 7.9
05_03_0478 - 14526180-14526578 28 7.9
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 431 STALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHHT 261
ST R A+ + A P+ A++LS S++S H++ +Y L+ PA+ HT
Sbjct: 108 STTFRLFRFAMRHAHAAFHPNIASLLSLLRAS-SSYSDHFLHMIHAYLLKTPASIHT 163
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 349 GDRMVAEEGKTRATDFSIAAIMARSA 426
GDR V EE + R TD S A+MA S+
Sbjct: 48 GDRAVVEEAEQRRTDSSQRAVMATSS 73
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 377 FPSSATILSPADFQHSAFSTSIKHLLESYALQF 279
+PSS L P DF+ S F+T+ LL ++++ F
Sbjct: 781 YPSSYNGLEPQDFRFSVFTTTGYTLLHNFSVYF 813
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 328 RFPHPSNTS*SPMHFSSPLTITPTTSVTSYCF 233
R +P TS + + S LTITP T+V S+ F
Sbjct: 212 RVRYPDGTSTAGTYISDLLTITPATAVRSFQF 243
>01_07_0154 -
41532220-41533252,41533786-41533971,41534759-41535039,
41535184-41535318,41535427-41535573,41535841-41536010,
41536110-41536197,41536999-41537219,41537725-41537810,
41537916-41537962
Length = 797
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 549 DLQLDAGELNDAGELCRDPXPW 484
DL LD GE ND G+L + W
Sbjct: 506 DLALDVGERNDVGQLAANADSW 527
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 298 SPMHFSSPLTITPTTSVTSYCFNHILF 218
SPM F PL + PTT+ S F ILF
Sbjct: 28 SPMDFG-PLNLLPTTTTASSDFGRILF 53
>10_06_0174 - 11485684-11485962
Length = 92
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 314 WMWKTPSAGSRQETGWWQKRERQELQ 391
W W+ + S GWW+ R EL+
Sbjct: 61 WRWRKKPSSSSPHGGWWRLRPVTELE 86
>09_04_0733 -
19791745-19791906,19792072-19792173,19792246-19792331,
19792655-19792926,19793430-19793521,19793615-19793730,
19794206-19794389,19794467-19794599,19794981-19795075
Length = 413
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 341 FQHSAFSTSIKHLLESYALQFPANHHTNNVRDI 243
FQH S++ +L ++A++ PA+ + + D+
Sbjct: 191 FQHPQIQKSLERILYTWAIRHPASGYVQGINDL 223
>05_03_0478 - 14526180-14526578
Length = 132
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 320 WKTPSAGSRQETGWWQKRERQELQTFRSRPSWLAAR*NGAV--RTRVPR 460
W+T +G G W +R+R++ + R + AR G R R PR
Sbjct: 41 WQTIGSGCVSSGGSWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPR 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,998,611
Number of Sequences: 37544
Number of extensions: 310688
Number of successful extensions: 892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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