Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G18
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   4.1  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   4.1  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    28   7.1  
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    28   7.1  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    28   7.1  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = -1

Query: 443  GLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHH 264
            G+RR    R +   ++     V  +   +  P   Q ++    + H+  + ++Q P +HH
Sbjct: 2300 GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQGMQQASQGPPVLHMQRAVSMQMPTSHH 2357


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = -1

Query: 443  GLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHH 264
            G+RR    R +   ++     V  +   +  P   Q ++    + H+  + ++Q P +HH
Sbjct: 2300 GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQGMQQASQGPPVLHMQRAVSMQMPTSHH 2357


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 358 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRISA 504
           +VA       TDF    +  R+A ERR+  A+S P T+    P   I A
Sbjct: 485 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 533


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 358 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRISA 504
           +VA       TDF    +  R+A ERR+  A+S P T+    P   I A
Sbjct: 253 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 301


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 358 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRISA 504
           +VA       TDF    +  R+A ERR+  A+S P T+    P   I A
Sbjct: 485 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 533


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 449 ASGLRRSTALRAMMAAIEKSVALVFPSSATI 357
           A+ LR  T  RAM + +EK   L+FP+   I
Sbjct: 163 ANILRTGTMARAMKSVLEKRSILIFPNEENI 193


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 437 RRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSI 312
           RR +A  A++ A+ + ++++FP SATI      + + F +SI
Sbjct: 101 RRCSAWIALVMALIRMLSVIFPMSATISKMGKPKGAIFMSSI 142


>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   PMXPRSAAVSLVXRNHTTHHRAXLSSERR 94
           P+  +S A      N+TTHHR   SS RR
Sbjct: 202 PIKQKSEANGTKPHNNTTHHRQFDSSRRR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,993
Number of Sequences: 27780
Number of extensions: 252802
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)