Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G17
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   7.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.9  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 152 FIVQKSGSTYDFISWH-AKNFLTESXR 75
           F  Q   ST+DF+S H A+  + ++ R
Sbjct: 244 FTEQSVTSTFDFLSLHPAETSMNDANR 270


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 423 AEKLKPGDLVXVNKDS 470
           A+KL+PGD + V+ ++
Sbjct: 194 AQKLQPGDFLLVSDNA 209


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 152 FIVQKSGSTYDFISWH-AKNFLTESXR 75
           F  Q   ST+DF+S H A+  + ++ R
Sbjct: 244 FTEQSVTSTFDFLSLHPAETSMNDANR 270


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 267 VSNVIELLDVDPQEEE 314
           +S+VIE+++ DP   E
Sbjct: 22  ISDVIEVIETDPDFHE 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,165
Number of Sequences: 336
Number of extensions: 1534
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)