Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G17
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 160 1e-40
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.12
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 30 0.16
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.28
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 28 0.85
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 0.85
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 1.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.0
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 2.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 3.4
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.4
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 4.5
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 6.0
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 7.9
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 7.9
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 160 bits (388), Expect = 1e-40
Identities = 78/138 (56%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Frame = +3
Query: 72 GAXALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNK 251
G + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI NK
Sbjct: 23 GLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNK 82
Query: 252 TLPYLVSNVIELLDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAE 428
LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+IGLV+ E
Sbjct: 83 MLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPE 142
Query: 429 KLKPGDLVXVNKDSYLIL 482
+L PGDL+ VNKDSYLI+
Sbjct: 143 ELHPGDLIGVNKDSYLII 160
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.12
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +3
Query: 81 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 260
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 261 YLVSNVIELLD 293
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.3 bits (65), Expect = 0.16
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 144 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 323
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEEDD 147
Query: 324 AVVDLDS-QRKGKCAVIK 374
+D D+ +RK +K
Sbjct: 148 QTMDEDAFERKSMQGELK 165
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.5 bits (63), Expect = 0.28
Identities = 26/117 (22%), Positives = 50/117 (42%)
Frame = +3
Query: 81 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 260
+L EEV R PTD+ + D + + K+E + I Q ++IK + LP
Sbjct: 715 SLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIKHVPTNTTSSVKLP 769
Query: 261 YLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 431
SN E + + + ++ L+SQ + +++ + +G+ + EK
Sbjct: 770 QQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQVGSSNAGNTTSVGMNEHEK 826
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.9 bits (59), Expect = 0.85
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = +3
Query: 138 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 317
L N ++ ++ V + ++Q I + T+ ++ + ++ + LL + Q +E
Sbjct: 5 LKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQE 64
Query: 318 DGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVXVNKDSYLIL 482
G+ V + GK V +K Y + + +D +++KP V + DSY ++
Sbjct: 65 PGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLI 120
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 0.85
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 138 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 317
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 318 D 320
+
Sbjct: 1174 E 1174
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 313 KKTAPLSI*THSVKGNAL*SRLQPGKHISCPSSAW 417
+K AP + TH K N+L S +P S S +W
Sbjct: 352 RKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSW 386
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 144 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 314
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 156 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 281
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 147 NEIKIMKSEVMRISHELQAQNDKIKENTEKI 239
NE+K+ K + + ++ N KE+TEKI
Sbjct: 855 NELKLAKQKCSNLQEKINFGNKLAKEHTEKI 885
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 108 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIEL 287
P+ EI S+ DNE ++ + + IS+E +ND +E E N+ S+
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE-AETSSGNEAADDEDSSSDAQ 119
Query: 288 LDVDPQEEEEDG-AVVDLDSQRK 353
V E DG + +LD +RK
Sbjct: 120 SSVPSFSEIHDGMSEEELDKERK 142
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 288 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 383
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 461 VDSY--QVSWFQFLCIYQADDG 402
VD+Y SW++ LC Y A+DG
Sbjct: 75 VDNYILSYSWYERLCSYLAEDG 96
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +3
Query: 138 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 317
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 318 D 320
+
Sbjct: 992 E 992
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +3
Query: 147 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 326
N + + ++ + ++Q + I +EK++ + + S + E L+++ QEE+ +
Sbjct: 196 NGLSVKLPNILTMDEQIQRLKEAIA--SEKLQQEERSQIIKSLMEEELEINEQEEKIKHS 253
Query: 327 VVDLD 341
+DLD
Sbjct: 254 FIDLD 258
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 377 FNPANIFLARHRLGRCRETETRRLGXSQQRLLFD 478
F+ +FL R CR+ RR ++Q LL++
Sbjct: 298 FHKLRLFLMERRYYYCRQRSVRRKEKTRQLLLYE 331
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 167 LHYFDFIVQKSGSTYDFISWH 105
L + D ++K G+T FI WH
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWH 59
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 180 RISHELQAQNDKIK-ENTEKIKVNKTLPYLVSNVIELLD--VDPQEEEEDGAV 329
R+S E A ++ + E+ + N+TL L N++E+ D DP ++ D ++
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVEIQDKSTDPLQKSLDSSL 631
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 168 SEVMRISHELQAQNDKIKENTEKIK-VNKTL 257
SE+ LQ QN+ K++ EKIK NK L
Sbjct: 174 SELFTQKQMLQLQNENFKDDYEKIKEENKRL 204
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 231 EKIKVNKTLPYLVSNVIELLDVDPQEEEED 320
+++ + TLPY V E+L + QEE+ D
Sbjct: 346 DRMLIISTLPYSHEEVKEILKIRCQEEDVD 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,114
Number of Sequences: 5004
Number of extensions: 28624
Number of successful extensions: 122
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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