Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G12
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.73
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 28 1.7
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 2.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 27 2.9
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 3.9
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.9
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 6.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.0
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.0
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 29.1 bits (62), Expect = 0.73
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 388 FGGVTSCRKVSYTSSESFEKNRNGWSDTPSVTVELRGKNTRFNLSDNFIRLLCQNTNS 561
+G + + + + S FE WS TPS T + KN F + N L+ +T S
Sbjct: 562 YGNMVNDSSIESSDSFVFENTSLSWSPTPS-TALFQLKNLNFTIPRNQFTLVVGSTGS 618
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Frame = +1
Query: 187 HRKQNSLKDKHVKGKESASAACET---QVCRESLEEC------LKN----FDKNVLAEMR 327
+ ++N + DK KGK+ A + T + RE L E LK+ ++ V+++M
Sbjct: 282 NERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMH 341
Query: 328 -----SVDLRSLATIAASSRRSLNDFGGVTSCRKVSYTSSESFEK 447
S D SLA A + ++ ND GG+ ++ + S +K
Sbjct: 342 ESSLLSKDSSSLAQAVAEAVKNANDLGGLVKRKRTKQEVTSSSQK 386
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +2
Query: 383 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 496
T+ ++L+++ L+++V L+K +VG+ L++ YE
Sbjct: 216 TLFLAVNLIDRFLSIKVVSLQKVQLVGLSALLIACKYE 253
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 6 GRWTYLPPKKLTKFSSALQKNYKNIQSSF 92
G+W Y PK+ F SA N K+ +F
Sbjct: 589 GKWYYKAPKEFATFESAKNLNGKSFVDNF 617
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 383 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 496
T+ ++++++ L+L+V L K +VG+ L + YE
Sbjct: 256 TLFLAVNIIDRFLSLRVCSLNKLQLVGIAALFIASKYE 293
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.9
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Frame = +1
Query: 295 NFDK---NVLAEMRSVDLRSLATIAASSRRSLNDFG---GVTSCRKVSYTSSESFEKN-- 450
NFD N L ++L+ + +S+++ L+D G R V + N
Sbjct: 422 NFDSDSINRLYAEAQLELKQRDGVLSSTKQQLSDLMTALGDAQERYVELVKNHRVNSNLT 481
Query: 451 -RNGWSDTPSVTVELRGKNTRFNLS-DNFIRLLCQNTNSTFKYNIQVRGFKTDRSISADL 624
N +D P T+E + KN N +NF++ L +S+ + V+ IS +
Sbjct: 482 ANNSLNDKPGFTIEQKDKNFSINNERNNFLQKL-STLDSSLAALVNVQRKLIKALISKER 540
Query: 625 KRNPNLVNRLR 657
+N ++ +++
Sbjct: 541 PQNGTVIKKIQ 551
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 691 PLNPEVAPRLDKLLNDDANHLTH 759
P PE + KLL DD HL+H
Sbjct: 569 PKTPEGLVSISKLLLDDREHLSH 591
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = -1
Query: 740 SSFSSLSNRGATS----GLSGGCFSVELVAANRSLLTRFGFLFRSALMLRSVLNP 588
+SFS SN G+T G GG F A + GF+ +A + NP
Sbjct: 127 TSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNAFGTSGFVSSNANAVNGTANP 181
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 9.0
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Frame = +1
Query: 202 SLKDKHVKGKESASAACETQVCRESLEECLKNFDKNVL----AEMRSVDL-RSLATIAAS 366
SLK ++ K+ A ++C+E E+CLK D+ + E R+ DL + L + S
Sbjct: 67 SLKKDNLFSKDGLLYAYY-ELCQEKFEKCLKEDDEEWIELWDLESRTWDLIQRLYSFRLS 125
Query: 367 SRR---SLNDFGGVTSCRKVSYTSS-ESFEKN------RNGWSDTPSVTVELRGKNTRFN 516
++ + F + Y+ + E+FE N R+ SD PS +E+RG +
Sbjct: 126 EQQGHIQSHAFSSRAVLEEEYYSQNPEAFENNIVFNWARDNSSDPPS--IEIRGNRWFYT 183
Query: 517 LSD 525
D
Sbjct: 184 RED 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,357
Number of Sequences: 5004
Number of extensions: 56658
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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