Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G12
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086...    29   3.1  
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447           29   3.1  
10_07_0021 - 11945928-11946221,11946720-11946770                       28   9.4  
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446...    28   9.4  
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    28   9.4  

>06_02_0206 +
           13005863-13005966,13006918-13007080,13008534-13008632,
           13008704-13008817,13009094-13009254,13009746-13009827,
           13009972-13010057,13011563-13011742,13011913-13012424,
           13012844-13013478
          Length = 711

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 574 NIQVRGFKTDRSISADLKRNPNLVNRLRLAA-TSSTEKHPPLNPEVAPRLDKLLNDD 741
           +I+  G K     S++         +L L A  SS+   PP+ P V P +D L  DD
Sbjct: 318 SIKPEGAKQPDQRSSEAASTVTPFEQLALPAPASSSSSKPPVEPAVGPSIDLLSGDD 374


>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
          Length = 607

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +1

Query: 79  YNLASCNMFSLNSINTQNQILISFSQLSCRYGN---LFKHRKQN-SLKDKHVKGKESASA 246
           +NLA C  +S   I+  +  ++  S+  C  G+   LFK   QN +  D H   +E   A
Sbjct: 311 FNLAPCTQYSFRIISFTDDGILGHSESKCYTGSKELLFKRTTQNVAGADAHTHRREKTQA 370


>10_07_0021 - 11945928-11946221,11946720-11946770
          Length = 114

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 688 PPLNPEVAPRLDKLLNDDANHLTH 759
           PPL     PRL+   NDD   +TH
Sbjct: 22  PPLTEAEFPRLEPTTNDDGEEVTH 45


>08_01_0511 +
           4459685-4459755,4461553-4463653,4463741-4463808,
           4465156-4465282,4465379-4465429
          Length = 805

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 313 LAEMRSVD-LRSLATIAASSRRSLNDFGGVTSCRK--VSYTSSESFEKNR 453
           +  M+S++ L++      SSR SL +FG +T  RK  V++    S E +R
Sbjct: 408 IGRMQSLEELQTFDIFTYSSRNSLQEFGQLTKLRKLRVTWNLDNSLEDHR 457


>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
            5478055-5478132,5478227-5478280,5478466-5478650,
            5478781-5480374,5480506-5480700,5480753-5480904,
            5481213-5481486,5481597-5481733,5482219-5482258,
            5482773-5483261,5483605-5484168
          Length = 1477

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 193  KQNSLKDKHVKGKESASAACETQVCRESLEECLKNFDKN 309
            K NSL+ ++ KG + + ++ ETQ  +E      +N  KN
Sbjct: 1036 KGNSLEPEYAKGSDDSQSSNETQRIKEIFMSKHRNVSKN 1074


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,792,077
Number of Sequences: 37544
Number of extensions: 342052
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)