Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G12
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    33   0.29 
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 148 FSQLSCRYGNLFKHRKQNSLKDKHVKGKESASAACET--QVCRESLEECLKNFDKNVLAE 321
           FS       N FK R+   + + H + K++A+A   T  +  + + E C K+  +N L  
Sbjct: 116 FSSSDGHLPNAFKGRETQHIAEYHKQFKKNANAYTGTVREALKLAFETCDKDLAENALPS 175

Query: 322 MRSVDLRSLATIAAS 366
            + V  R  A +AAS
Sbjct: 176 AKGVIDRHAAMVAAS 190


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = +1

Query: 478 VTVELRGKNTRFNLSDNFIRLLCQNTNSTFKYNIQVRGFKTDRSISADLKRNPNLVNRLR 657
           +T EL         + + I     NT+   K N++    KT++S++  +K    L+  L 
Sbjct: 346 ITKELEKSAKSLEETTDKIGSKIDNTSQAIKSNLEEASLKTEKSVNDAVKSGEKLIGDLA 405

Query: 658 LAA----TSSTEKHPPLNPEVAPRLDKLLNDDANHLTH 759
             A     S+ +K      ++    D  L D  N L H
Sbjct: 406 SEAKKTFDSAEQKLDAKFSKIGSTADSTLEDVKNGLRH 443


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 10/171 (5%)
 Frame = +1

Query: 121 NTQNQI--LISFSQLSCRYGNLFKHRKQNSLKDKHVKGKESASAACETQVCRESLEECLK 294
           NTQ  I  L  F+    +  N F H   N      +  K    A+  T+VC+++     K
Sbjct: 101 NTQYAIDLLNEFADYEYKLPNSF-HGTDNGALHIFLAEKLFPQASANTKVCKKAYNNS-K 158

Query: 295 NFDKNVLAEMRSVDLRSLATIAASSRRSLNDFGGVTSCRKVSYTSSESFEKNRNGWS--- 465
           NFD     E     +  ++T     R      G        S       +   +GW    
Sbjct: 159 NFDDLFTYESCIRAIFGVSTDFGKVRIMKKGTGWAKDGWLTSMMWHPELDFMFHGWKTNQ 218

Query: 466 --DTPSVTVE--LRGKNTRFN-LSDNFIRLLCQNTNSTFKYNIQVRGFKTD 603
             +TP+V +E    G++  +N LS       C   NST+ Y+ ++RG K +
Sbjct: 219 LRETPNVKLEPSQMGRDFWYNPLSGPIDLQKCSPQNSTWSYDSRLRGDKNE 269


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +1

Query: 190 RKQNSLKDKHVKGKESASAACETQVCRESLEECLKNFDKNVLAEMRSVDLRSLATIAASS 369
           RK  S +    K KE +SA  ++     SL +  + + K+  + M   DL+ L  +   S
Sbjct: 545 RKLKSDRKLVEKFKEVSSAVSKSLPLLVSLRKIAEEYKKDNSSGM--TDLKKLKPLQGLS 602

Query: 370 RRSLNDFGGVTSCRKVSYTSSESFEKN 450
           +   +  G + S  KVS +  E+F +N
Sbjct: 603 KPFGDAVGALVSITKVSRSELETFVRN 629


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
 Frame = +1

Query: 178 LFKHRKQ-NSLKDKHVKGKESASAACETQVCRESLEECL--KNFDKNVLAEMRSVDLRSL 348
           + + +KQ  S K + V GK       + ++ R  +EE L  K FDK+ +A+  +++ +SL
Sbjct: 133 IVRQKKQLESKKSQKVDGKSKEER--DRKIAR-LVEEILGLKTFDKDSVAKFAALNTKSL 189

Query: 349 ATIAASSRRSLND-FGGVTSCRKVSYTSSESFEKNRNGWSDTPSVTVELRGK 501
           A +  + +  + +       C+ +     +S  +    W+ T +  ++  G+
Sbjct: 190 AELKINGKTEVAERLMYKLVCQSIIVEKIQSIREKYTEWNKTAAFFMQRLGQ 241


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
 Frame = +1

Query: 178 LFKHRKQ-NSLKDKHVKGKESASAACETQVCRESLEECL--KNFDKNVLAEMRSVDLRSL 348
           + + +KQ  S K + V GK       + ++ R  +EE L  K FDK+ +A+  +++ +SL
Sbjct: 133 IVRQKKQLESKKSQKVDGKSKEER--DRKIAR-LVEEILGLKTFDKDSVAKFAALNTKSL 189

Query: 349 ATIAASSRRSLND-FGGVTSCRKVSYTSSESFEKNRNGWSDTPSVTVELRGK 501
           A +  + +  + +       C+ +     +S  +    W+ T +  ++  G+
Sbjct: 190 AELKINGKTEVAERLMYKLVCQSIIVEKIQSIREKYTEWNKTAAFFMQRLGQ 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,814
Number of Sequences: 27780
Number of extensions: 315303
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)