Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G11
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 1.9
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 27 4.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.8
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 5.8
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 5.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.6
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 7.6
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 7.6
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 375 FDLFFRTNPFQGEFTIFAGLEECMKFLEN 461
FDLF NP F+IF L C + +
Sbjct: 608 FDLFLEKNPIPQLFSIFTSLNHCKSLISS 636
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.9 bits (59), Expect = 1.9
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = +3
Query: 264 KQMARQNGI-VQPLL----TDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFA 428
KQ+A QN + PL+ +DLY + ++S + + ++L + T G I
Sbjct: 925 KQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYST--CLGPVKIVN 982
Query: 429 GLEECMKFLENFHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEE 587
G + + F+ FH SN +I L + I P Y Y+KE K ++ +EE
Sbjct: 983 GKVK-LGFM--FHSSNPNIVNLIKN-DVYISPNGYAYVKENVRKSLLAKMLEE 1031
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 235 KCRVKYLLQINRWLDKTV--LCNHF 303
KC+ + + + RW+D+ + LC HF
Sbjct: 532 KCQTEDEMSVTRWIDRNLIRLCQHF 556
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 437 GVYEIFRKLSLF*QRYQIFEANI 505
G+Y++ +LS+ Q QIFE NI
Sbjct: 1295 GLYDLRSRLSIIPQESQIFEGNI 1317
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 415 NSPWNGFVRKNKSNTATS 362
NS W GF++K SN TS
Sbjct: 3 NSKWGGFLKKAMSNVETS 20
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 832 PSNPPMYAYLDADSPPSGPCAXRSPNS 752
PS+ ++A L AD+ S P A RSP S
Sbjct: 37 PSSTGLFATLVADTNSSVPSASRSPES 63
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = -3
Query: 832 PSNPPMYAYLDADSPPSGPCAXRSPNSSRDTFLPATIRYLAAFVAIKLAKLTNVSRVVSN 653
P N P++ + P GP NS + PAT R L V +++ T + +
Sbjct: 41 PGNAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNVNTQVSH-TAIPNPANG 99
Query: 652 SCATMSGP 629
A GP
Sbjct: 100 YAAVYGGP 107
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 762 LRXAQGPDGGLSASKYAYIGGFDG 833
+R Q P G+SA K+A FDG
Sbjct: 270 VRTQQKPPNGISAPKHARCASFDG 293
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 7.6
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 288 IVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQG-EFTIFAGLEECMKFLENF 464
+V L TDLY++TM A + D V + +P + L E ++ L N
Sbjct: 6 VVSILDTDLYKLTMLQAVLE--HYPDAQVSYKYTNRSPKMALNQEAYNWLREQIRGLRNL 63
Query: 465 HYSNSDIKYLKQTLPENIEPEFYLYLKE 548
H + ++L++ P ++ FY ++ E
Sbjct: 64 HLLPEEEQWLRKNCP-YLKESFYEFMHE 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,060
Number of Sequences: 5004
Number of extensions: 69000
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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