Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G10
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 84 5e-17
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 42 2e-04
12_02_0172 - 14891923-14892102,14892894-14892980 28 2.9
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 28 2.9
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 27 5.0
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 27 5.0
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 27 5.0
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 27 5.0
04_04_1673 - 35250564-35251379,35251507-35251749 27 5.0
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 6.6
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 8.7
01_01_0676 + 5194718-5194940,5195420-5195952 27 8.7
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 83.8 bits (198), Expect = 5e-17
Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 18/111 (16%)
Frame = +1
Query: 55 LRVAKVXGGVASKLSKLRVVSKAIARVYIVYHQKXKVNLRNHYKNKKYKPLDLXAKKTRA 234
LRVAKV GG +KLSK++VV +IARV V QK + LR YK K PLDL KKTRA
Sbjct: 31 LRVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRA 90
Query: 235 MRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAVKA 333
+R+ LTKH + +KT +E +++ FP R YA+KA
Sbjct: 91 IRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 55 LRVAKVXGGVASKLSKLRVVSKAIARVYIVYHQKXKVNLRNHYKNKKYK--PLDLXAKKT 228
LRVA+V GG +KLS ++V + LR YK KK PLDL KKT
Sbjct: 138 LRVARVTGGAPNKLSNIKV----------------RTALREAYKKKKKSLLPLDLRPKKT 181
Query: 229 RAMRKALTKHEAKI 270
A+R+ LTKH+ +
Sbjct: 182 CAIRRRLTKHQGML 195
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 VAKVXGGVASKLSKLRVVSKAIARVY--IVYHQKXKVNLRNHYKNKKYKPLDLXAKKTRA 234
+A + GV K+S + A R +V H+ ++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 235 MRKALTK 255
R+A TK
Sbjct: 60 SRRAKTK 66
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 163 VNLRNHYKNKKYKPLDLXAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 333
+ L NH+ N+K K + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 193 KYKPLDLXAKKTRAMRKALTKHEAK-IKTRKEI 288
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 94 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 126
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 163 VNLRNHYKNKKYKPLDLXAKKTRAMRKALTKHEAK--IKTRKEIRKK 297
+ L NH+ N+K K + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 193 KYKPLDLXAKKTRAMRKALTKHEAK-IKTRKEI 288
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 78 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 110
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 163 VNLRNHYKNKKYKPLDLXAKKTRAMRKALTKHEAK--IKTRKEIRKK 297
+ L NH+ N+K K + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>04_04_1673 - 35250564-35251379,35251507-35251749
Length = 352
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 131 RAIALLTTRSLDSLEATPPXTLATRRFVXAGLSAASC 21
RA+A+L S L +PP A+RR + AASC
Sbjct: 9 RAVAVLQLVSTVVLLLSPPPAAASRRDMSVDFHAASC 45
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 RNHYKNKKYKPLDLXAK-KTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 330
RNH N L AK + M+K++ + T E K +FPP Y K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKNGMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 148 HQKXKVNLRNHYKNKKYKPLDLXAKKTRAMRKALTKHEAKIKTRKE 285
H K + ++ NK+ L L K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>01_01_0676 + 5194718-5194940,5195420-5195952
Length = 251
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 172 RNHYKN--KKYKPLDLXAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 330
RNH +N K PL +K M+K++ + + T E K +FPP Y K
Sbjct: 54 RNHIQNLAKLAGPLYAILRKN-GMKKSMNYNGVEFFTFGEDNKLRIFPPNSYKFK 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,964,854
Number of Sequences: 37544
Number of extensions: 100254
Number of successful extensions: 296
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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