Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G09
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   5.4  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   7.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   7.2  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   7.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.5  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   9.5  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   9.5  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 225 GKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYG 380
           GK  G   + D  +          F   RG     +Y TRV G GG  T YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 402 HWPSLDDHRNWYCRLQALILWYRKPVRSVCR 310
           +W S+D  +NWY R+  LI  +   +  +CR
Sbjct: 99  YWESID--KNWYSRVLFLIQSFPTRLYHICR 127


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 335 VSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDL-PSPHFLVPSDKVVN 186
           + L+     +++EE P +   ++ S VAL Q+P  L P+   +V  ++VV+
Sbjct: 151 IELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFGMVIEEEVVD 201


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 649 RQECLXKRHLYSCFDNG 599
           R  C  K HL +C DNG
Sbjct: 83  RDMCFTKNHLLACHDNG 99


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 438 FACSSQ*QPWRSHWPSLDDHRNW 370
           FA +S  Q W   WPS DD RN+
Sbjct: 932 FAKNSDLQQWNGLWPS-DDLRNY 953


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 466 QLPACGILVRTLTCQPAEWSLRS 534
           QL A GIL RT  C+P +  L++
Sbjct: 158 QLKAPGILPRTSVCEPMQTGLKA 180


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 436 KLVAALGSKHQLPACGILVRTLTCQPAEWSLRSSVTEGL 552
           K +  +  +HQL   G +V  L C P  WS  ++   GL
Sbjct: 61  KFIEKINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,970
Number of Sequences: 5004
Number of extensions: 58340
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)