Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G09
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438... 32 0.46
09_04_0734 + 19796297-19796329,19796866-19797129 29 4.3
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 29 4.3
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 29 4.3
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.7
06_03_1506 + 30641428-30642168 29 5.7
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 29 5.7
06_02_0125 + 12122812-12122911,12123647-12123993 28 9.9
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 9.9
>08_02_0725 -
20442988-20443180,20443268-20443540,20443642-20443853,
20443935-20444247,20444334-20444441,20444537-20444643,
20444743-20444781
Length = 414
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 281 TTFTKKSLVALSQSPEDLPSPHFLVPSDKVV 189
TTF +++ A S +PE+LP P ++ D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263
>09_04_0734 + 19796297-19796329,19796866-19797129
Length = 98
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 207 DKEMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGP-GGDST 371
++E GGG FG GE G G G + LTG G V G GD+T
Sbjct: 35 EEECGGGVSFGAAGEDGHGGDGDGDGVNAYLRFPGPTLTGSGDGGVVGGEVDGDAT 90
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 240 TLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 383
T + G+ G GG+ + G +G YGT G GG GG
Sbjct: 106 TANDRAGGIRGGGGFGAGGYGSGGGYSSGGGYGTGEYGRGGGYAGNGG 153
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 110 FYASWLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 241
F S+L +E++ + +PS Y+R LG GNGG + + D
Sbjct: 709 FARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 119 SWLRREVSDHQP-IFKVSPTPSRYSRLCHLGQGNGGREGLRDFGRERP 259
SWL REV H P F + P P S+ GQ N +E + F P
Sbjct: 94 SWLWREVLKHNPDAFTIKPRPLPPSQDPLEGQENQNQEHEKHFAHVAP 141
>06_03_1506 + 30641428-30642168
Length = 246
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 219 GGGKVFGTLGESDQGLFGKG-GYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 383
GGG +G+ G G +G+G GY G G G+ G GG + YGG
Sbjct: 73 GGGGGYGSGGGEGNGAYGQGYGYGSGNGGGGGGGYGGGGGGS--YGSGGMGSGYGG 126
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +3
Query: 219 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 383
G G FG G G G GGY + GQ YG GG YGG
Sbjct: 57 GSGYGFGNGGVGGGGYGGGGGYGSG--GGEGNGAYGQGYGYGSGNGGGGGGGYGG 109
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 18 SVSSSETCHNSKCLPRCCYPLHSLXCVXAQVSMPPGYAEKY---PITSQFSKSVRHP 179
+V ++E H +CL CC P+ C + + Y E + P +Q+ K +HP
Sbjct: 98 TVLAAEGSHRRRCLLSCCGPMDPTSCTVLVIDL--AYPELWYCRPGDNQWVKLHQHP 152
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = +3
Query: 219 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 383
GGG G G G GGY + G GQ YG G G S YGG
Sbjct: 64 GGGYGGGGYGHPGYGGGYGGGYGHPGYGGGYGGGYGQGYGCG-YGHPGHSGGYGG 117
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 222 GGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPG--GDSTSY 377
GG+ GT G G + +GG + F+D RG G YG R G GD + Y
Sbjct: 244 GGRGGGTGGGGRGGGYNRGGGDDRGFDDHRGGRGG--YGGRDQGNNQRGDESGY 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,273,095
Number of Sequences: 37544
Number of extensions: 434280
Number of successful extensions: 1239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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