Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G06
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    31   0.73 
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 283 WMLR*QNFLLVLINLKPKAY*NSARIRPGKTQP 381
           W+ R   +LLV++ LKP +Y ++A +  G +QP
Sbjct: 148 WVYRFWRWLLVMLKLKPASYASAAEMAWGTSQP 180


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 233 KHEFLKSFIFGVLSSLRCIYHF 168
           K+EFLKS I   L +L C+ HF
Sbjct: 231 KNEFLKSHIHSKLRNLMCMLHF 252


>AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical
           protein B0238.1 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 VNKSEAQSVLEQCKDKTGQDAADKAFEIFQCYY 413
           V K   ++ LE  +DK+G+    K  EIF  YY
Sbjct: 367 VVKKAVEAYLENIEDKSGEKIGKKLVEIFGDYY 399


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 315 VNKSEAQSVLEQCKDKTGQDAA 380
           +N SE Q +LE+ KD+  QDAA
Sbjct: 118 MNASEIQKLLEEGKDEMAQDAA 139


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 141 CVKXSGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAIL 260
           CV  SGV  E +  A+T   S    F KF+   F++++ L
Sbjct: 204 CVVTSGVLLEAMGNARTTHNSNSSRFGKFIRIEFDENSKL 243


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 377 CVLPGLILALF*YALGFRF-INTRRKFC*RNIHVQCTI*VQDCGF 246
           C++PGL++  F Y L F +  N    F  R +  + T   QDC F
Sbjct: 420 CIMPGLLIWPFIYTLRFMYNYNYNDDFKNRFLTKEFTKIDQDCAF 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,387
Number of Sequences: 27780
Number of extensions: 210261
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)