Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G05
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear recep...    28   5.9  
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 145 KTMALPDYGEVAQVVHDV--SKGQEPREIKGEQPINCAIS*LMLEPASIIENSYVVKYMF 318
           + +  P    + Q +H V   +G E   I+  Q +  ++S  + E    + NSY+V   F
Sbjct: 234 RAICAPQRDTIVQALHKVVEERGDEDPAIRVGQLL-LSMS-YITEQVQAMTNSYLVMTFF 291

Query: 319 DFWKCDTIDCTVCSY 363
           D   CD+I   + S+
Sbjct: 292 DVVSCDSIMYDLLSF 306


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +1

Query: 82  YYLVIGSFEVVVNDKLIYSKLKT-MALPDYGEVAQVVHDVSKGQEPREIKGEQPINCAIS 258
           Y L    F+ V ND ++  KL+T + LP++ +  +V    +  + P E+K          
Sbjct: 332 YALKTKLFDHVFND-IVVEKLRTKVLLPEHVKRVKVATPYAVDRRPEELKPTYLDTTGRL 390

Query: 259 *LMLEPASIIENS---YVVKYMFDF 324
            L+LE  +I+ +    + V Y F+F
Sbjct: 391 VLVLEKENIVPDHSQFFTVTYEFEF 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,755
Number of Sequences: 27780
Number of extensions: 270504
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)