Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_G04
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 177 7e-45
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 175 4e-44
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 5.0
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 5.0
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 6.6
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 6.6
10_08_0694 - 19929918-19930292,19930633-19930866 28 8.8
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 177 bits (431), Expect = 7e-45
Identities = 89/188 (47%), Positives = 123/188 (65%), Gaps = 2/188 (1%)
Frame = +1
Query: 88 RHWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 267
+HWQ +VKTWFNQPAR+ RR+ R LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 268 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 444
FTL E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV
Sbjct: 75 FTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
Query: 445 KGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGI 621
G++ EE ATQ++G MP+ + +SV +T+D K FKAY LR R + +G
Sbjct: 135 AGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGA 194
Query: 622 RAXRLKDA 645
R R +A
Sbjct: 195 RQKRAAEA 202
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 45 MGKGNNMIPNGHFHK 89
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 175 bits (425), Expect = 4e-44
Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 2/188 (1%)
Frame = +1
Query: 88 RHWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 267
+HWQ +VKTWFNQPAR+ RR+ R LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 268 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 444
FTL E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV
Sbjct: 75 FTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
Query: 445 KGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGI 621
G++ EE ATQ++G MP+ + +SV +T++ K FKAY LR R + VG
Sbjct: 135 AGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGA 194
Query: 622 RAXRLKDA 645
R R +A
Sbjct: 195 RQKRAAEA 202
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 45 MGKGNNMIPNGHFHK 89
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 122 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 292
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 361 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 489
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 346 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 516
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,396
Number of Sequences: 37544
Number of extensions: 375794
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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