Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G03
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004DA174 Cluster: Platelet glycoprotein Ib alpha c...    35   1.9  
UniRef50_A0BRY8 Cluster: Chromosome undetermined scaffold_124, w...    34   4.5  
UniRef50_Q01DE8 Cluster: ABC transporter C family protein; n=1; ...    33   7.9  

>UniRef50_UPI00004DA174 Cluster: Platelet glycoprotein Ib alpha
           chain precursor (Glycoprotein Ibalpha) (GP-Ib alpha)
           (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains:
           Glycocalicin].; n=1; Xenopus tropicalis|Rep: Platelet
           glycoprotein Ib alpha chain precursor (Glycoprotein
           Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha)
           (CD42B-alpha) (CD42B) [Contains: Glycocalicin]. -
           Xenopus tropicalis
          Length = 613

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 377 NHIRNLVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAVH 237
           +HI NL  +++    + S N   S      HHL+N Q L+ +HN +H
Sbjct: 107 DHIPNLSLLTNLNKLILSHNRITSVPDAAFHHLKNLQQLYLQHNGIH 153


>UniRef50_A0BRY8 Cluster: Chromosome undetermined scaffold_124,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_124,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 566

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 596 IKQRFPDMEDTNQNWGFATSNESDYDDGLDGKRPISFDKIRPKDV 730
           IKQ F + +D N N+G A +   DY +  D    I  +K R  D+
Sbjct: 393 IKQFFQNDDDFNWNYGIACAGTGDYKEAEDALTQIQSEKYRSDDI 437


>UniRef50_Q01DE8 Cluster: ABC transporter C family protein; n=1;
            Ostreococcus tauri|Rep: ABC transporter C family protein
            - Ostreococcus tauri
          Length = 1665

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 600  NKDSPIWKTRTKIGDSQRRTKATTMMDWTVKDRSHSIRLGQRMSL 734
            +KD  +W+  TK+G      KA   +D  V D   +  LGQR  L
Sbjct: 1365 HKDDAVWEVLTKVGLRAMVEKAVKRLDMEVIDNGANFSLGQRQLL 1409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,789,994
Number of Sequences: 1657284
Number of extensions: 10671881
Number of successful extensions: 26436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26408
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)